Variant report

Variant	rs1009770
Chromosome Location	chr10:44361284-44361285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008803	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1009769	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1009771	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899921	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10899923	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899925	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899927	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899928	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899929	0.93[EUR][1000 genomes]
rs10899932	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899937	0.82[EUR][1000 genomes]
rs10899944	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899945	0.83[EUR][1000 genomes]
rs11238736	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11238737	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11238741	0.93[EUR][1000 genomes]
rs11238749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238754	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238756	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238761	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238764	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12357341	0.84[ASN][1000 genomes]
rs12359360	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1468061	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17464560	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17465611	0.82[EUR][1000 genomes]
rs2031513	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2169200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948580	0.86[EUR][1000 genomes]
rs4948581	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948786	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56034709	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7903927	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7909314	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs881714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs912805	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9633744	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1009770	LINC00840	cis	lung	GTEx

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44357800-44361600	Enhancers	Right Atrium	heart
2	chr10:44357800-44367200	Enhancers	Left Ventricle	heart
3	chr10:44358400-44361400	Enhancers	Gastric	stomach
4	chr10:44358400-44361600	Enhancers	Right Ventricle	heart
5	chr10:44358400-44362200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:44358800-44361400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:44359200-44361800	Enhancers	Fetal Heart	heart
8	chr10:44359400-44361400	Enhancers	Ovary	ovary
9	chr10:44359600-44361400	Enhancers	Spleen	Spleen
10	chr10:44359800-44366400	Weak transcription	Lung	lung
11	chr10:44360000-44361400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:44360000-44362200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:44360000-44362400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:44360000-44362400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:44360000-44362600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:44360000-44362800	Weak transcription	Osteobl	bone
17	chr10:44360000-44363000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:44360000-44363600	Enhancers	HepG2	liver
19	chr10:44360000-44363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:44360200-44362800	Weak transcription	HSMM	muscle
22	chr10:44360200-44363800	Weak transcription	Hela-S3	cervix
23	chr10:44360400-44362400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:44360400-44362600	Weak transcription	NHLF	lung
25	chr10:44360400-44366400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:44360600-44362400	Weak transcription	Adipose Nuclei	Adipose
27	chr10:44361000-44361400	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:44361000-44362400	Weak transcription	HUVEC	blood vessel
29	chr10:44361000-44362600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:44361200-44362200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:44361200-44362200	Weak transcription	NHDF-Ad	bronchial
32	chr10:44361200-44362800	Weak transcription	Fetal Kidney	kidney
33	chr10:44361200-44362800	Weak transcription	Fetal Lung	lung
34	chr10:44361200-44363200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:44361200-44365800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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