Variant report

Variant	rs1008803
Chromosome Location	chr10:44358300-44358301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44351789..44354047-chr10:44357316..44359324,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1009769	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1009770	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1009771	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899923	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899925	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899927	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899928	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899929	0.86[EUR][1000 genomes]
rs10899932	0.82[EUR][1000 genomes]
rs10899944	0.82[EUR][1000 genomes]
rs11238741	0.86[EUR][1000 genomes]
rs11238749	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238750	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238753	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238754	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238755	0.84[EUR][1000 genomes]
rs11238756	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238759	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238761	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238764	0.81[EUR][1000 genomes]
rs12359360	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468061	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17464560	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2031513	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2169200	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948580	0.92[EUR][1000 genomes]
rs4948581	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034709	0.81[EUR][1000 genomes]
rs7903927	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7909314	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs881714	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs912805	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633744	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1008803	LOC338579	cis	cerebellum	SCAN
rs1008803	LINC00840	cis	lung	GTEx

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44352000-44359200	Weak transcription	Fetal Heart	heart
2	chr10:44353000-44359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44353400-44358400	Weak transcription	Fetal Stomach	stomach
4	chr10:44353400-44358400	Weak transcription	Gastric	stomach
5	chr10:44353400-44358800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:44353400-44358800	Weak transcription	Pancreas	Pancrea
7	chr10:44353600-44359600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:44356800-44361200	Enhancers	NHDF-Ad	bronchial
9	chr10:44357000-44361000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:44357000-44361000	Enhancers	HUVEC	blood vessel
11	chr10:44357200-44360000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44357200-44360000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44357200-44360000	Enhancers	Osteobl	bone
14	chr10:44357200-44360400	Enhancers	NHLF	lung
15	chr10:44357200-44361000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:44357400-44359400	Enhancers	A549	lung
17	chr10:44357400-44359600	Enhancers	HepG2	liver
18	chr10:44357400-44359800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:44357400-44360000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:44357400-44360200	Enhancers	Hela-S3	cervix
21	chr10:44357400-44360400	Enhancers	NH-A	brain
22	chr10:44357400-44360600	Enhancers	Stomach Mucosa	stomach
23	chr10:44357600-44360000	Enhancers	Aorta	Aorta
24	chr10:44357600-44360200	Enhancers	HSMM	muscle
25	chr10:44357600-44360400	Enhancers	Fetal Intestine Small	intestine
26	chr10:44357600-44360600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:44357800-44358400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:44357800-44359200	Enhancers	Spleen	Spleen
29	chr10:44357800-44359800	Enhancers	Lung	lung
30	chr10:44357800-44360400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:44357800-44360600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:44357800-44361600	Enhancers	Right Atrium	heart
33	chr10:44357800-44367200	Enhancers	Left Ventricle	heart
34	chr10:44358000-44359000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:44358000-44359000	Weak transcription	HSMMtube	muscle
36	chr10:44358000-44359800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:44358000-44360400	Enhancers	Colon Smooth Muscle	Colon
38	chr10:44358000-44360400	Enhancers	Fetal Intestine Large	intestine
39	chr10:44358000-44360400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr10:44358000-44360600	Enhancers	Adipose Nuclei	Adipose
41	chr10:44358200-44359000	Weak transcription	Psoas Muscle	Psoas
42	chr10:44358200-44360200	Enhancers	Small Intestine	intestine
43	chr10:44358200-44360800	Weak transcription	Fetal Kidney	kidney
44	chr10:44358200-44361200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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