Variant report

Variant	rs12359360
Chromosome Location	chr10:44366565-44366566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1008803	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1009769	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1009770	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1009771	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899923	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899927	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10899928	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899929	0.82[EUR][1000 genomes]
rs11238741	0.82[EUR][1000 genomes]
rs11238749	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11238750	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11238753	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11238754	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11238755	0.81[EUR][1000 genomes]
rs11238756	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238759	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11238761	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1468061	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17464560	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2031513	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2169200	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4948580	0.89[EUR][1000 genomes]
rs4948581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7903927	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7909314	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs881714	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs912805	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633744	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12359360	LINC00840	cis	lung	GTEx

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44357800-44367200	Enhancers	Left Ventricle	heart
2	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44361800-44373000	Weak transcription	Fetal Heart	heart
4	chr10:44363200-44367000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:44364200-44366600	Weak transcription	HSMM	muscle
6	chr10:44364200-44366600	Weak transcription	HSMMtube	muscle
7	chr10:44364200-44374000	Weak transcription	NHLF	lung
8	chr10:44365000-44366600	Weak transcription	Right Atrium	heart
9	chr10:44365000-44366800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:44365000-44373400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:44365000-44373400	Weak transcription	Right Ventricle	heart
12	chr10:44365200-44366600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:44365400-44371400	Weak transcription	NHDF-Ad	bronchial
14	chr10:44365600-44366600	Enhancers	Spleen	Spleen
15	chr10:44365800-44367400	Enhancers	Fetal Stomach	stomach
16	chr10:44365800-44368400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:44366000-44367200	Enhancers	Adipose Nuclei	Adipose
18	chr10:44366000-44368400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:44366400-44366600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:44366400-44366800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:44366400-44366800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:44366400-44366800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:44366400-44366800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:44366400-44366800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:44366400-44366800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr10:44366400-44366800	Enhancers	Lung	lung
27	chr10:44366400-44367200	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:44366400-44367200	Enhancers	Fetal Muscle Leg	muscle
29	chr10:44366400-44368600	Enhancers	Brain Hippocampus Middle	brain

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