Variant report

Variant	rs7903927
Chromosome Location	chr10:44371903-44371904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1008803	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1009769	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1009770	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1009771	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899923	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899925	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899927	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899928	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899929	0.86[EUR][1000 genomes]
rs10899932	0.81[EUR][1000 genomes]
rs10899944	0.81[EUR][1000 genomes]
rs11238741	0.84[EUR][1000 genomes]
rs11238749	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11238750	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11238753	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11238754	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11238755	0.84[EUR][1000 genomes]
rs11238756	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238759	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238761	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11238764	0.80[EUR][1000 genomes]
rs12359360	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468061	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17464560	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2031513	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2169200	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4948580	0.91[EUR][1000 genomes]
rs4948581	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56034709	0.80[EUR][1000 genomes]
rs7909314	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs881714	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs912805	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633744	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7903927	LINC00840	cis	lung	GTEx
rs7903927	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44361800-44373000	Weak transcription	Fetal Heart	heart
3	chr10:44364200-44374000	Weak transcription	NHLF	lung
4	chr10:44365000-44373400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44365000-44373400	Weak transcription	Right Ventricle	heart
6	chr10:44367200-44373200	Weak transcription	Left Ventricle	heart
7	chr10:44367200-44373200	Weak transcription	Right Atrium	heart
8	chr10:44367200-44373200	Weak transcription	Spleen	Spleen
9	chr10:44367400-44373600	Weak transcription	Fetal Stomach	stomach
10	chr10:44368400-44373600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:44368400-44377200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:44370800-44373200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:44371400-44375200	Enhancers	Fetal Kidney	kidney
14	chr10:44371800-44373200	Weak transcription	NHDF-Ad	bronchial
15	chr10:44371800-44373600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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