Variant report

Variant	rs1468061
Chromosome Location	chr10:44348098-44348099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008803	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1009769	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1009770	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1009771	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899921	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10899923	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899925	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899927	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899928	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899929	0.92[EUR][1000 genomes]
rs10899932	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899937	0.81[EUR][1000 genomes]
rs10899944	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899945	0.82[EUR][1000 genomes]
rs11238736	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11238737	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11238741	0.94[EUR][1000 genomes]
rs11238749	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238750	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238753	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238754	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238756	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11238759	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238761	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238764	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12357341	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12359360	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17464560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17465611	0.81[EUR][1000 genomes]
rs2031513	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2169200	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948580	0.87[EUR][1000 genomes]
rs4948581	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4948786	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56034709	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7903927	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7909314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881714	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912805	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9633744	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1468061	HNRNPF	cis	parietal	SCAN
rs1468061	LINC00840	cis	lung	GTEx
rs1468061	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44339200-44349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
3	chr10:44342200-44350200	Weak transcription	Right Atrium	heart
4	chr10:44342400-44349200	Weak transcription	HSMM	muscle
5	chr10:44342800-44349000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:44342800-44349200	Weak transcription	NHLF	lung
7	chr10:44343000-44352400	Weak transcription	HUVEC	blood vessel
8	chr10:44343600-44349600	Weak transcription	Left Ventricle	heart
9	chr10:44346600-44350800	Enhancers	Placenta	Placenta
10	chr10:44346600-44353000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:44347000-44348200	Enhancers	Fetal Muscle Leg	muscle
12	chr10:44347000-44348600	Enhancers	Fetal Brain Male	brain
13	chr10:44347000-44350400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:44347200-44351800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:44347400-44348200	Enhancers	Fetal Heart	heart
16	chr10:44347400-44348400	Enhancers	Fetal Brain Female	brain
17	chr10:44347400-44350200	Enhancers	HSMMtube	muscle
18	chr10:44348000-44348400	Weak transcription	Pancreas	Pancrea

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