Variant report

Variant	rs11238737
Chromosome Location	chr10:44338110-44338111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:44337942-44338312	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr10:44337908-44338392	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44333858..44335492-chr10:44336453..44338152,2	MCF-7	breast:

Variant related genes	Relation type
LINC00619	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1009770	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10899921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899922	0.87[EUR][1000 genomes]
rs10899927	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10899932	0.83[ASN][1000 genomes]
rs11238722	0.81[AFR][1000 genomes]
rs11238736	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238738	0.87[EUR][1000 genomes]
rs11238739	0.94[EUR][1000 genomes]
rs11238749	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11238750	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11238753	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11238754	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11238759	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11238761	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11238764	0.81[ASN][1000 genomes]
rs12357341	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468061	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17464560	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1870632	0.80[EUR][1000 genomes]
rs1870633	0.82[EUR][1000 genomes]
rs1870636	0.94[EUR][1000 genomes]
rs2031513	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2169200	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4522124	0.84[AFR][1000 genomes]
rs4948784	0.94[EUR][1000 genomes]
rs4948785	0.93[EUR][1000 genomes]
rs7080911	0.84[AFR][1000 genomes]
rs748715	0.84[EUR][1000 genomes]
rs7909314	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs881714	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238737	LINC00840	cis	lung	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44335200-44339400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44337000-44339400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44337200-44338200	Enhancers	Pancreas	Pancrea
4	chr10:44337400-44338200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44337400-44342400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:44337600-44338400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:44337600-44338400	Enhancers	NHDF-Ad	bronchial
8	chr10:44337600-44338600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:44337600-44338600	Weak transcription	Spleen	Spleen
10	chr10:44337800-44338600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:44337800-44338600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:44337800-44339000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:44338000-44338200	Enhancers	Lung	lung
14	chr10:44338000-44338800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:44338000-44338800	Enhancers	Right Atrium	heart
16	chr10:44338000-44339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:44338000-44339600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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