Variant report

Variant	rs7080911
Chromosome Location	chr10:44316351-44316352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10899921	0.84[AFR][1000 genomes]
rs11238722	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238736	0.92[CEU][hapmap];0.84[AFR][1000 genomes]
rs11238737	0.83[CEU][hapmap];0.84[AFR][1000 genomes]
rs12357341	0.83[AFR][1000 genomes]
rs1563885	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244131	0.82[CHB][hapmap]
rs2863237	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4522124	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7080911	CXCL12	cis	parietal	SCAN
rs7080911	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
2	chr10:44311600-44317800	Weak transcription	Aorta	Aorta
3	chr10:44312400-44317800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:44312600-44316400	Weak transcription	Adipose Nuclei	Adipose
5	chr10:44312600-44316400	Weak transcription	Ovary	ovary
6	chr10:44312800-44316400	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:44312800-44317800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:44312800-44317800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:44312800-44318200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:44313000-44318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:44313200-44317400	Enhancers	Fetal Heart	heart
12	chr10:44313400-44316400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:44313400-44316600	Weak transcription	Right Atrium	heart
14	chr10:44313400-44316800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:44313600-44318200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:44313800-44316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:44314000-44316400	Weak transcription	Left Ventricle	heart
18	chr10:44314600-44318400	Weak transcription	Primary T cells from cord blood	blood
19	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
20	chr10:44314800-44323200	Weak transcription	Gastric	stomach
21	chr10:44315200-44319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:44315400-44316400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:44315400-44317800	Weak transcription	Fetal Stomach	stomach
25	chr10:44315600-44316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:44315600-44316800	Enhancers	Osteobl	bone
27	chr10:44315600-44317000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:44316000-44317600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr10:44316200-44316600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:44316200-44316800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:44316200-44317000	Enhancers	NHDF-Ad	bronchial
32	chr10:44316200-44317000	Enhancers	NHLF	lung
33	chr10:44316200-44317400	Enhancers	Right Ventricle	heart

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