Variant report

Variant	rs11238736
Chromosome Location	chr10:44337098-44337099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:44337060-44337210	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44333858..44335492-chr10:44336453..44338152,2	MCF-7	breast:

Variant related genes	Relation type
LINC00619	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1009770	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10899921	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899922	0.84[EUR][1000 genomes]
rs10899927	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10899932	0.83[ASN][1000 genomes]
rs11238722	0.81[AFR][1000 genomes]
rs11238737	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238738	0.84[EUR][1000 genomes]
rs11238739	0.90[EUR][1000 genomes]
rs11238749	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11238750	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11238753	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11238754	0.91[ASN][1000 genomes]
rs11238759	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11238761	0.91[ASN][1000 genomes]
rs11238764	0.81[ASN][1000 genomes]
rs12357341	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468061	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17464560	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1870636	0.90[EUR][1000 genomes]
rs2031513	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2169200	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4522124	0.84[AFR][1000 genomes]
rs4948784	0.90[EUR][1000 genomes]
rs4948785	0.89[EUR][1000 genomes]
rs7080911	0.84[AFR][1000 genomes]
rs748715	0.81[EUR][1000 genomes]
rs7909314	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs881714	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238736	LINC00840	cis	lung	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44332000-44337200	Weak transcription	Pancreas	Pancrea
2	chr10:44335200-44339400	Weak transcription	Psoas Muscle	Psoas
3	chr10:44335800-44337400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44337000-44339400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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