Variant report

Variant	rs748715
Chromosome Location	chr10:44343087-44343088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44340953..44343939-chr10:44348201..44350447,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793503	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10899921	0.84[EUR][1000 genomes]
rs10899922	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10899929	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899937	0.87[ASN][1000 genomes]
rs10899945	0.81[ASN][1000 genomes]
rs11238736	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs11238737	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11238738	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11238739	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238741	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238766	0.81[ASN][1000 genomes]
rs12219425	0.83[AFR][1000 genomes]
rs12357341	0.83[EUR][1000 genomes]
rs17465611	0.90[ASN][1000 genomes]
rs1870636	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948783	0.82[AFR][1000 genomes]
rs4948784	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948785	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948786	0.81[CEU][hapmap]
rs7901526	0.87[GIH][hapmap];0.81[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs748715	HNRNPF	cis	parietal	SCAN
rs748715	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44339200-44349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44340600-44343400	Enhancers	Ovary	ovary
3	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
4	chr10:44341000-44346600	Weak transcription	Placenta	Placenta
5	chr10:44341200-44346200	Weak transcription	Stomach Mucosa	stomach
6	chr10:44341200-44347600	Weak transcription	Gastric	stomach
7	chr10:44342200-44343200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:44342200-44343200	Weak transcription	Esophagus	oesophagus
9	chr10:44342200-44343200	Weak transcription	Left Ventricle	heart
10	chr10:44342200-44343200	Enhancers	Osteobl	bone
11	chr10:44342200-44343400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:44342200-44343400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44342200-44343400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:44342200-44343400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:44342200-44343800	Enhancers	Primary T cells from cord blood	blood
16	chr10:44342200-44347400	Weak transcription	Fetal Heart	heart
17	chr10:44342200-44347400	Weak transcription	HSMMtube	muscle
18	chr10:44342200-44350200	Weak transcription	Right Atrium	heart
19	chr10:44342400-44343200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:44342400-44349200	Weak transcription	HSMM	muscle
21	chr10:44342800-44347000	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:44342800-44349000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:44342800-44349200	Weak transcription	NHLF	lung
24	chr10:44343000-44352400	Weak transcription	HUVEC	blood vessel

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