Variant report

Variant	rs11238766
Chromosome Location	chr10:44384191-44384192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10899929	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899937	0.90[ASN][1000 genomes]
rs10899944	0.84[EUR][1000 genomes]
rs10899945	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238739	0.81[ASN][1000 genomes]
rs11238741	0.83[ASN][1000 genomes]
rs17465611	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1870636	0.81[ASN][1000 genomes]
rs2169199	0.81[CEU][hapmap]
rs4948784	0.81[ASN][1000 genomes]
rs4948785	0.81[ASN][1000 genomes]
rs56034709	0.83[EUR][1000 genomes]
rs748715	0.81[ASN][1000 genomes]
rs898550	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3495236	chr10:44382596-44385094	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3387566	chr10:44382878-44384477	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3495062	chr10:44383204-44384213	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238766	LINC00840	cis	lung	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44375800-44387400	Weak transcription	Left Ventricle	heart
3	chr10:44377600-44387600	Weak transcription	Right Atrium	heart
4	chr10:44378200-44387000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44380400-44386800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:44381200-44384600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:44382400-44384400	Weak transcription	Hela-S3	cervix
8	chr10:44382600-44389000	Enhancers	NHDF-Ad	bronchial
9	chr10:44383200-44385200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:44383200-44388800	Enhancers	Osteobl	bone
11	chr10:44383400-44384800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:44383400-44388600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44383400-44388800	Enhancers	NHLF	lung
14	chr10:44383400-44389000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:44383800-44384600	Enhancers	HSMMtube	muscle
16	chr10:44383800-44388600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:44383800-44388800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:44384000-44386000	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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