Variant report

Variant	rs729247
Chromosome Location	chr10:44322446-44322447
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10793501	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10899918	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899922	0.81[AFR][1000 genomes]
rs11238738	0.88[AFR][1000 genomes]
rs11238739	0.80[AFR][1000 genomes]
rs12219425	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2085798	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146640	0.94[ASN][1000 genomes]
rs4948781	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948782	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948783	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948784	0.80[AFR][1000 genomes]
rs4948785	0.80[AFR][1000 genomes]
rs912804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
2	chr10:44314800-44323200	Weak transcription	Gastric	stomach
3	chr10:44321400-44323000	Weak transcription	Aorta	Aorta
4	chr10:44322200-44323200	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links