Variant report

Variant	rs4146640
Chromosome Location	chr10:44312843-44312844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44312661..44314867-chr10:44316556..44318099,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10899918	0.98[ASN][1000 genomes]
rs10899949	0.82[CHB][hapmap]
rs2085798	0.94[ASN][1000 genomes]
rs4948781	0.94[ASN][1000 genomes]
rs4948782	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948783	0.94[ASN][1000 genomes]
rs729247	0.94[ASN][1000 genomes]
rs912804	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4146640	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
2	chr10:44309400-44313400	Enhancers	NHDF-Ad	bronchial
3	chr10:44309600-44313400	Enhancers	NHLF	lung
4	chr10:44309800-44314800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:44310000-44313400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:44310200-44313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44310400-44313000	Enhancers	Fetal Thymus	thymus
8	chr10:44310400-44313400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:44310600-44313400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr10:44310800-44313400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:44311000-44313000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:44311000-44313400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:44311000-44314000	Enhancers	Left Ventricle	heart
16	chr10:44311000-44314600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:44311000-44314600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:44311200-44313200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr10:44311200-44313800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:44311600-44317800	Weak transcription	Aorta	Aorta
21	chr10:44311800-44313200	Flanking Active TSS	Fetal Heart	heart
22	chr10:44311800-44313400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:44311800-44313400	Enhancers	Placenta	Placenta
24	chr10:44311800-44313400	Enhancers	Right Atrium	heart
25	chr10:44311800-44313400	Enhancers	Right Ventricle	heart
26	chr10:44312000-44313000	Flanking Active TSS	Dnd41	blood
27	chr10:44312200-44313400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:44312200-44313400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:44312200-44314600	Enhancers	Primary T cells from cord blood	blood
30	chr10:44312200-44314600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr10:44312400-44313000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:44312400-44313000	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:44312400-44313000	Enhancers	GM12878-XiMat	blood
34	chr10:44312400-44313400	Enhancers	Osteobl	bone
35	chr10:44312400-44313600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:44312400-44313600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:44312400-44317800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:44312600-44313400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:44312600-44316400	Weak transcription	Adipose Nuclei	Adipose
40	chr10:44312600-44316400	Weak transcription	Ovary	ovary
41	chr10:44312800-44313200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:44312800-44313800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:44312800-44313800	Weak transcription	Thymus	Thymus
44	chr10:44312800-44314200	Weak transcription	Fetal Stomach	stomach
45	chr10:44312800-44315600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:44312800-44316400	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:44312800-44317800	Weak transcription	Colon Smooth Muscle	Colon
48	chr10:44312800-44317800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:44312800-44318200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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