Variant report

Variant	rs10793657
Chromosome Location	chr1:146761571-146761572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10736837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751410	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793660	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10793661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793662	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs10900332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900334	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10900335	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs10900336	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239954	1.00[JPT][hapmap]
rs11239970	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11239971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11800580	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs11811023	0.86[JPT][hapmap]
rs12046626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17159924	0.86[JPT][hapmap]
rs17160050	1.00[JPT][hapmap]
rs17160051	1.00[JPT][hapmap]
rs17355398	0.86[JPT][hapmap]
rs17355509	0.86[JPT][hapmap]
rs17356184	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs17356219	0.80[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs17356233	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs17356240	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs17356492	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17359629	0.86[JPT][hapmap]
rs17360443	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs1890040	0.86[EUR][1000 genomes]
rs1932980	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1932981	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999820	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs2210954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2354428	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs2883323	0.81[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2883324	0.81[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3737849	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737850	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3737853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737854	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737855	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs3766519	0.86[JPT][hapmap]
rs3766520	0.86[JPT][hapmap]
rs3766522	0.86[JPT][hapmap]
rs41295831	0.81[AFR][1000 genomes]
rs4264042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4284292	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4301678	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4326679	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4373796	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4385773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4453096	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4518968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4568882	0.81[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4950304	0.86[JPT][hapmap]
rs4950306	0.86[JPT][hapmap]
rs4950308	0.86[JPT][hapmap]
rs4950315	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4950316	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs4950318	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4950319	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4950371	0.86[JPT][hapmap]
rs4950392	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4950394	0.82[YRI][hapmap]
rs4950409	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593761	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593762	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6593763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593765	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593767	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6659630	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6660721	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6660985	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6665597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674987	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6677762	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6678317	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6686480	0.86[JPT][hapmap]
rs6692355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6692453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6697022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697092	0.83[YRI][hapmap]
rs6703892	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs72691041	0.85[AMR][1000 genomes]
rs72691054	0.92[AMR][1000 genomes]
rs72691090	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72691093	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72691095	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72691097	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72691098	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72691102	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692904	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692905	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692907	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692914	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692917	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692942	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692963	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692965	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72692968	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692971	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72692973	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72692975	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72692979	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72692980	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7515160	0.86[JPT][hapmap]
rs7517150	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7517324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7523954	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7525523	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7526996	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528091	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7528700	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7541393	0.86[JPT][hapmap]
rs7542951	0.82[AMR][1000 genomes]
rs7544598	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7547279	0.83[YRI][hapmap]
rs7554833	0.80[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7555817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555913	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs972368	0.86[JPT][hapmap]
rs976621	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872251	chr1:146152553-146803630	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv872252	chr1:146471863-147398135	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv999546	chr1:146507577-147356574	Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
4	nsv535123	chr1:146507577-147356574	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
5	nsv492188	chr1:146507649-147381479	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
6	nsv916754	chr1:146507711-147417736	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
7	nsv547673	chr1:146510112-147398135	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
8	nsv547674	chr1:146522722-147396797	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
9	nsv998341	chr1:146531446-147384720	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
10	nsv535124	chr1:146531446-147384720	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
11	nsv1003493	chr1:146531446-147389944	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
12	nsv998209	chr1:146543722-147384720	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
13	nsv535126	chr1:146543722-147384720	Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
14	nsv872255	chr1:146550780-146969712	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
15	nsv872256	chr1:146556596-147410973	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1012331	chr1:146603479-147384720	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
17	nsv535131	chr1:146603479-147384720	Genic enhancers Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
18	nsv1009943	chr1:146618929-146893851	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
19	nsv535132	chr1:146618929-146893851	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
20	nsv437047	chr1:146643555-146841602	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	nsv1005809	chr1:146647822-146886419	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
22	nsv535134	chr1:146647822-146886419	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv1004849	chr1:146661516-147286826	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
24	nsv535135	chr1:146661516-147286826	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
25	nsv547676	chr1:146686228-146996047	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
26	esv2761654	chr1:146750270-146809156	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10793657	CHD1L	cis	Whole Blood	GTEx
rs10793657	RP11-337C18.8	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:146722800-146769800	Strong transcription	Dnd41	blood
2	chr1:146723800-146763200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:146724200-146769800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:146726600-146769600	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:146727000-146770000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:146727200-146762200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:146727200-146767800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:146727200-146770200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:146727400-146767800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:146727400-146767800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:146728200-146770800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:146729400-146769800	Strong transcription	Primary T cells from cord blood	blood
13	chr1:146733000-146770600	Strong transcription	HepG2	liver
14	chr1:146733200-146762600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:146733600-146763000	Strong transcription	Primary B cells from cord blood	blood
16	chr1:146735600-146768600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:146735800-146769000	Strong transcription	Fetal Thymus	thymus
18	chr1:146736400-146770200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr1:146741000-146764800	Weak transcription	Fetal Brain Male	brain
20	chr1:146742400-146767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:146745200-146769400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr1:146745600-146764200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:146745600-146766400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:146745600-146768200	Strong transcription	K562	blood
25	chr1:146745800-146766200	Strong transcription	A549	lung
26	chr1:146746000-146761800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:146746000-146763400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:146746000-146769400	Strong transcription	Hela-S3	cervix
29	chr1:146746200-146770000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr1:146746200-146770000	Strong transcription	Brain Anterior Caudate	brain
31	chr1:146746400-146769400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr1:146746400-146770000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr1:146746600-146763000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr1:146746600-146769800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:146746600-146770000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr1:146746800-146769600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:146746800-146770000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr1:146746800-146770000	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:146747000-146765800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:146747000-146770000	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:146747600-146769000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:146748000-146766000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:146748200-146763400	Weak transcription	HSMMtube	muscle
44	chr1:146749600-146766800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:146749600-146769000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr1:146750200-146762200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr1:146754200-146763000	Weak transcription	Psoas Muscle	Psoas
48	chr1:146754800-146769600	Strong transcription	Left Ventricle	heart
49	chr1:146755000-146763200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr1:146755200-146768400	Strong transcription	Fetal Muscle Leg	muscle

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