The 2.0 version of rSNPBase

Variant report

Variant rs6593762
Chromosome Location chr1:146770657-146770658
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:146728200-146770800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:146755400-146770800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:146761600-146771400 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:146765000-146772600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr1:146765400-146771400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:146765600-146771600 Weak transcription Colonic Mucosa Colon
7 chr1:146766000-146777600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr1:146766600-146772000 Weak transcription Fetal Brain Male brain
9 chr1:146767200-146772000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
10 chr1:146767200-146772200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:146767400-146772200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:146767600-146772200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:146767800-146771000 ZNF genes & repeats Liver Liver
14 chr1:146767800-146771200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:146767800-146772200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
16 chr1:146767800-146772400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:146767800-146772400 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
18 chr1:146767800-146774600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:146768200-146771000 ZNF genes & repeats K562 blood
20 chr1:146768600-146771000 Weak transcription Esophagus oesophagus
21 chr1:146768600-146771000 Weak transcription Lung lung
22 chr1:146768600-146771200 Weak transcription Placenta Placenta
23 chr1:146768600-146771400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:146768600-146772200 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr1:146768800-146770800 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:146768800-146771400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:146768800-146771600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:146768800-146772000 Weak transcription Colon Smooth Muscle Colon
29 chr1:146768800-146772000 Weak transcription Right Ventricle heart
30 chr1:146769000-146771200 Weak transcription Fetal Intestine Large intestine
31 chr1:146769000-146771600 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr1:146769000-146771600 Weak transcription Fetal Thymus thymus
33 chr1:146769000-146771800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr1:146769000-146771800 Weak transcription Fetal Lung lung
35 chr1:146769000-146772200 Weak transcription Brain Hippocampus Middle brain
36 chr1:146769400-146772800 ZNF genes & repeats H1 Cell Line embryonic stem cell
37 chr1:146769600-146771200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr1:146769600-146771200 Weak transcription Left Ventricle heart
39 chr1:146769600-146771800 Weak transcription NHDF-Ad bronchial
40 chr1:146769600-146773400 Weak transcription Brain Inferior Temporal Lobe brain
41 chr1:146769800-146770800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr1:146769800-146770800 ZNF genes & repeats Fetal Muscle Leg muscle
43 chr1:146769800-146771200 Weak transcription Pancreas Pancrea
44 chr1:146769800-146771400 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr1:146769800-146771600 Weak transcription Brain Cingulate Gyrus brain
46 chr1:146769800-146772600 Weak transcription Brain Angular Gyrus brain
47 chr1:146770000-146770800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr1:146770000-146771000 Weak transcription GM12878-XiMat blood
49 chr1:146770000-146771000 Weak transcription HMEC breast
50 chr1:146770000-146771200 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015