Variant report

Variant	rs10795115
Chromosome Location	chr10:4023855-4023856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826601..3829527-chr10:4022671..4024333,3	K562	blood:
2	chr10:4017109..4020587-chr10:4022770..4025732,3	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10795116	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10795117	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10795118	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10904153	0.94[EUR][1000 genomes]
rs10904163	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904164	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904165	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252218	0.95[EUR][1000 genomes]
rs11252222	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252232	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11252240	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11252241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11252242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11252243	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2031578	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148188	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2148189	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34133718	0.90[EUR][1000 genomes]
rs4242767	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880652	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880653	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072577	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7079191	0.94[EUR][1000 genomes]
rs7098821	0.81[CEU][hapmap];0.80[GIH][hapmap];0.81[EUR][1000 genomes]
rs7920244	0.94[EUR][1000 genomes]
rs7922194	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4017400-4025200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:4017400-4025400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:4017800-4025200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr10:4018000-4024400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr10:4018200-4024400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:4018200-4025200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:4020200-4025200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:4020800-4024200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:4020800-4024400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:4021200-4024400	Enhancers	Primary T cells from cord blood	blood
12	chr10:4021200-4027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:4021800-4024200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:4022000-4024600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
16	chr10:4022400-4024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:4022400-4024000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:4022600-4024400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:4022600-4025000	Weak transcription	Fetal Thymus	thymus
20	chr10:4022600-4028200	Weak transcription	Spleen	Spleen
21	chr10:4022800-4029400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:4023200-4024200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:4023200-4024400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr10:4023400-4024200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:4023400-4024200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:4023400-4024400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:4023600-4024200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:4023600-4024200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:4023800-4024000	Enhancers	Dnd41	blood
30	chr10:4023800-4024200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:4023800-4024600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr10:4023800-4025000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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