Variant report

Variant	rs7079191
Chromosome Location	chr10:4006579-4006580
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795115	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs10795116	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs10795117	0.88[EUR][1000 genomes]
rs10795118	0.88[EUR][1000 genomes]
rs10904153	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904163	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10904164	0.95[EUR][1000 genomes]
rs10904165	0.94[EUR][1000 genomes]
rs11252218	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11252222	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11252232	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11252238	0.94[EUR][1000 genomes]
rs11252240	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11252241	0.93[EUR][1000 genomes]
rs11252242	0.92[EUR][1000 genomes]
rs11252243	0.92[EUR][1000 genomes]
rs2031578	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs2148188	0.92[EUR][1000 genomes]
rs2148189	0.93[EUR][1000 genomes]
rs34133718	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4242767	0.89[EUR][1000 genomes]
rs4880652	0.95[EUR][1000 genomes]
rs4880653	0.94[EUR][1000 genomes]
rs4881259	0.82[CHB][hapmap]
rs7072577	0.87[EUR][1000 genomes]
rs7098821	0.84[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920244	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922194	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4002200-4022000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:4004000-4011000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:4004200-4007600	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr10:4004200-4011000	Weak transcription	Primary T cells from cord blood	blood
5	chr10:4004200-4011000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:4005000-4007400	Enhancers	Stomach Mucosa	stomach
7	chr10:4005000-4007600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:4005200-4006600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:4005400-4006600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:4005600-4007000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:4005600-4007400	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:4005600-4011000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:4005600-4011600	Weak transcription	Small Intestine	intestine
14	chr10:4005600-4012400	Weak transcription	Esophagus	oesophagus
15	chr10:4005800-4011000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:4006000-4006800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr10:4006000-4010800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:4006000-4010800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:4006200-4007200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:4006200-4011600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:4006400-4011200	Weak transcription	Dnd41	blood

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