Variant report

Variant	rs7920244
Chromosome Location	chr10:4015693-4015694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3827591..3829463-chr10:4014874..4016681,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795115	0.88[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs10795116	0.93[EUR][1000 genomes]
rs10795117	0.87[EUR][1000 genomes]
rs10795118	0.87[EUR][1000 genomes]
rs10904153	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904163	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10904164	0.94[EUR][1000 genomes]
rs10904165	0.94[EUR][1000 genomes]
rs11252218	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252222	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11252232	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11252238	0.94[EUR][1000 genomes]
rs11252240	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11252241	0.93[EUR][1000 genomes]
rs11252242	0.92[EUR][1000 genomes]
rs11252243	0.92[EUR][1000 genomes]
rs2031578	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs2148188	0.91[EUR][1000 genomes]
rs2148189	0.92[EUR][1000 genomes]
rs34133718	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242767	0.88[EUR][1000 genomes]
rs4880652	0.94[EUR][1000 genomes]
rs4880653	0.94[EUR][1000 genomes]
rs4881259	0.91[CHD][hapmap]
rs7072577	0.87[EUR][1000 genomes]
rs7079191	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7098821	0.89[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs7922194	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4002200-4022000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:4011200-4016000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:4011200-4016200	Enhancers	Dnd41	blood
4	chr10:4011200-4019200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:4012600-4017200	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:4013200-4019800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:4013200-4020000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:4013400-4019800	Weak transcription	HMEC	breast
9	chr10:4014000-4015800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:4014000-4016000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:4014200-4015800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:4014600-4019800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:4014800-4016200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:4015000-4015800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr10:4015000-4016200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:4015200-4016200	Enhancers	Primary T cells from cord blood	blood
17	chr10:4015200-4017200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:4015400-4015800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:4015400-4016200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:4015400-4016600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:4015400-4016800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:4015400-4016800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:4015400-4017000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:4015400-4022200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:4015600-4015800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:4015600-4015800	Enhancers	NHDF-Ad	bronchial
27	chr10:4015600-4016600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:4015600-4016800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr10:4015600-4016800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:4015600-4016800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr10:4015600-4017400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:4015600-4021000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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