Variant report

Variant	rs10795585
Chromosome Location	chr10:5660964-5660965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr10:5660951-5661089	K562	blood:	n/a	n/a
2	HDAC2	chr10:5660915-5661185	K562	blood:	n/a	n/a
3	EGR1	chr10:5660873-5661210	K562	blood:	n/a	chr10:5661042-5661052
4	HNF4G	chr10:5660858-5661190	HepG2	liver:	n/a	chr10:5661091-5661103 chr10:5661097-5661112 chr10:5661090-5661103 chr10:5661090-5661103 chr10:5661092-5661108 chr10:5661097-5661104 chr10:5661097-5661112 chr10:5661092-5661114
5	HNF4A	chr10:5660949-5661227	HepG2	liver:	n/a	chr10:5661091-5661103 chr10:5661097-5661112 chr10:5661090-5661103 chr10:5661090-5661103 chr10:5661092-5661108 chr10:5661097-5661104 chr10:5661097-5661112 chr10:5661092-5661114
6	HDAC2	chr10:5660945-5661204	HepG2	liver:	n/a	n/a
7	EGR1	chr10:5660930-5661167	K562	blood:	n/a	chr10:5661042-5661052
8	MXI1	chr10:5660962-5661067	HepG2	liver:	n/a	n/a
9	NR2F2	chr10:5660900-5661254	K562	blood:	n/a	n/a
10	HNF4A	chr10:5660886-5661199	HepG2	liver:	n/a	chr10:5661091-5661103 chr10:5661097-5661112 chr10:5661090-5661103 chr10:5661090-5661103 chr10:5661092-5661108 chr10:5661097-5661104 chr10:5661097-5661112 chr10:5661092-5661114

No.	Distal block	Cell Line	Cell type
1	chr10:5533027..5543195-chr10:5659124..5672516,23	MCF-7	breast:
2	chr10:5484376..5493176-chr10:5653017..5671828,35	MCF-7	breast:
3	chr10:5651351..5653513-chr10:5657933..5661985,4	K562	blood:
4	chr10:5659171..5662010-chr10:5707160..5709672,2	MCF-7	breast:
5	chr10:5636886..5639693-chr10:5658929..5661685,2	MCF-7	breast:
6	chr10:5659054..5661643-chr10:5799141..5801779,2	MCF-7	breast:
7	chr10:5636705..5640848-chr10:5659114..5662313,5	MCF-7	breast:
8	chr10:5534628..5543320-chr10:5658612..5667994,15	MCF-7	breast:
9	chr10:5483715..5496703-chr10:5653374..5669304,43	MCF-7	breast:
10	chr10:5493862..5495402-chr10:5660246..5663182,2	MCF-7	breast:
11	chr10:5652672..5654514-chr10:5659912..5662392,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228951	TF binding region
ENSG00000173848	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000196372	Chromatin interaction
ENSG00000178372	Chromatin interaction
ENSG00000231483	Chromatin interaction
ENSG00000242147	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10752129	0.98[ASN][1000 genomes]
rs10795569	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255423	1.00[ASN][1000 genomes]
rs11255575	0.98[ASN][1000 genomes]
rs11255580	0.98[ASN][1000 genomes]
rs11594094	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12250399	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12266655	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12771305	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12777544	0.82[AMR][1000 genomes]
rs12778832	0.94[EUR][1000 genomes]
rs4747436	0.87[EUR][1000 genomes]
rs9663617	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv894798	chr10:5503610-5670275	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv523491	chr10:5542109-5720067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv2757364	chr10:5557024-5720512	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1040932	chr10:5637870-5665774	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv894806	chr10:5643511-5670275	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1054888	chr10:5645033-5694612	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv466719	chr10:5645895-5662915	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv549891	chr10:5645895-5662915	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv519582	chr10:5646103-5720067	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv894807	chr10:5647942-5691135	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv8599	chr10:5649129-5719928	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv1050965	chr10:5649760-5717125	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv1044330	chr10:5652006-5717125	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	nsv975791	chr10:5652225-5711077	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
18	nsv466720	chr10:5652277-5715401	Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
19	nsv549892	chr10:5652277-5715401	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
20	nsv1037709	chr10:5652739-5717125	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	nsv470917	chr10:5654167-5715401	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
22	nsv818742	chr10:5654167-5715401	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
23	nsv1036492	chr10:5656962-5711147	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	nsv540473	chr10:5656962-5711147	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
25	nsv1036253	chr10:5657162-5711008	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
26	nsv540474	chr10:5657162-5711008	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5650200-5662600	Enhancers	Fetal Muscle Leg	muscle
2	chr10:5650400-5661800	Enhancers	Fetal Muscle Trunk	muscle
3	chr10:5651800-5665000	Weak transcription	Spleen	Spleen
4	chr10:5656000-5665000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:5656400-5661200	Weak transcription	Fetal Kidney	kidney
6	chr10:5656600-5661000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:5656600-5661000	Weak transcription	Fetal Lung	lung
8	chr10:5656600-5661000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:5656600-5661000	Weak transcription	Stomach Mucosa	stomach
10	chr10:5656600-5661200	Weak transcription	NHLF	lung
11	chr10:5656600-5661400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:5656600-5662800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:5656600-5665000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:5656600-5665000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:5656800-5661000	Weak transcription	HSMMtube	muscle
16	chr10:5656800-5665000	Weak transcription	Liver	Liver
17	chr10:5657000-5662600	Enhancers	Adipose Nuclei	Adipose
18	chr10:5657200-5662800	Enhancers	Fetal Stomach	stomach
19	chr10:5657400-5662800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:5657400-5665000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:5658000-5665000	Weak transcription	Colonic Mucosa	Colon
22	chr10:5658000-5673600	Weak transcription	Left Ventricle	heart
23	chr10:5658200-5661200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:5658800-5662600	Enhancers	Esophagus	oesophagus
25	chr10:5659000-5662200	Enhancers	Placenta	Placenta
26	chr10:5659200-5661800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:5659200-5662200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:5659200-5662400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:5659200-5665000	Weak transcription	Pancreas	Pancrea
30	chr10:5659400-5662800	Enhancers	Stomach Smooth Muscle	stomach
31	chr10:5659600-5662800	Enhancers	Aorta	Aorta
32	chr10:5660000-5662800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:5660200-5661000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:5660200-5661600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:5660200-5661600	Enhancers	Psoas Muscle	Psoas
36	chr10:5660200-5661800	Enhancers	NHEK	skin
37	chr10:5660200-5662000	Enhancers	Fetal Intestine Small	intestine
38	chr10:5660200-5662200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:5660200-5662400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:5660200-5662400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr10:5660400-5661000	Weak transcription	Right Atrium	heart
42	chr10:5660400-5661200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:5660400-5661200	Enhancers	K562	blood
44	chr10:5660400-5661800	Enhancers	Fetal Intestine Large	intestine
45	chr10:5660400-5661800	Enhancers	HMEC	breast
46	chr10:5660400-5661800	Enhancers	HSMM	muscle
47	chr10:5660400-5662200	Enhancers	Fetal Thymus	thymus
48	chr10:5660400-5663000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:5660600-5661000	Weak transcription	A549	lung
50	chr10:5660600-5661200	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links