Variant report

Variant	rs10797927
Chromosome Location	chr1:183955271-183955272
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:183948339..183950247-chr1:183954738..183957083,2	K562	blood:
2	chr1:183951094..183952829-chr1:183954460..183956370,2	K562	blood:
3	chr1:183954011..183955861-chr1:184020180..184021943,2	K562	blood:
4	chr1:183950977..183955895-chr1:183999343..184002420,4	K562	blood:
5	chr1:183954395..183958643-chr1:183998431..184003306,4	K562	blood:

Variant related genes	Relation type
ENSG00000198860	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10752927	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797925	0.99[ASN][1000 genomes]
rs10797926	0.99[ASN][1000 genomes]
rs10797928	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797929	0.99[ASN][1000 genomes]
rs10797930	0.85[ASN][1000 genomes]
rs10797932	0.82[ASN][1000 genomes]
rs10911477	0.99[ASN][1000 genomes]
rs10911480	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911481	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911482	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911483	0.99[ASN][1000 genomes]
rs10911484	0.97[ASN][1000 genomes]
rs10911485	0.85[ASN][1000 genomes]
rs10911486	0.85[ASN][1000 genomes]
rs12021841	0.99[ASN][1000 genomes]
rs12023778	0.99[ASN][1000 genomes]
rs12027096	0.85[ASN][1000 genomes]
rs12028482	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12030903	0.85[ASN][1000 genomes]
rs12030924	0.85[ASN][1000 genomes]
rs12034897	0.85[ASN][1000 genomes]
rs12034962	0.85[ASN][1000 genomes]
rs12042354	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12044468	0.99[ASN][1000 genomes]
rs12059407	0.97[ASN][1000 genomes]
rs12060999	0.97[ASN][1000 genomes]
rs12061041	0.97[ASN][1000 genomes]
rs12064779	0.85[ASN][1000 genomes]
rs12069197	0.85[ASN][1000 genomes]
rs12085344	0.85[ASN][1000 genomes]
rs12727244	1.00[CEU][hapmap]
rs12741795	1.00[CEU][hapmap]
rs12746606	1.00[CEU][hapmap]
rs12748062	1.00[CEU][hapmap]
rs12756229	1.00[CEU][hapmap]
rs12760593	1.00[CEU][hapmap]
rs1475402	0.85[ASN][1000 genomes]
rs16861859	0.99[ASN][1000 genomes]
rs1887282	0.85[ASN][1000 genomes]
rs1887283	0.88[ASN][1000 genomes]
rs1926866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1926868	0.99[ASN][1000 genomes]
rs1998926	0.99[ASN][1000 genomes]
rs2025807	0.82[ASN][1000 genomes]
rs2148672	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148678	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2182623	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182624	0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3930248	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650648	1.00[CEU][hapmap]
rs6662690	0.96[ASN][1000 genomes]
rs6698329	0.97[ASN][1000 genomes]
rs6701930	0.85[ASN][1000 genomes]
rs7410829	0.99[ASN][1000 genomes]
rs751410	0.99[ASN][1000 genomes]
rs751411	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832026	chr1:183785065-183961847	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:183902600-183965200	Weak transcription	Left Ventricle	heart
2	chr1:183923200-183961000	Weak transcription	Pancreas	Pancrea
3	chr1:183952000-183958800	Enhancers	NHDF-Ad	bronchial
4	chr1:183953000-183959000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:183953000-183965200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:183953200-183957400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:183953600-183957600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:183953800-183956600	Weak transcription	Brain Anterior Caudate	brain
9	chr1:183953800-183965200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:183954000-183956000	Weak transcription	Fetal Heart	heart
11	chr1:183954000-183956400	Weak transcription	Brain Angular Gyrus	brain
12	chr1:183954000-183958400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:183954000-183965600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:183954200-183956000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:183954200-183956000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:183954200-183956000	Weak transcription	NHLF	lung
17	chr1:183954200-183956400	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:183954400-183956800	Weak transcription	Brain Substantia Nigra	brain
19	chr1:183954800-183956800	Enhancers	K562	blood
20	chr1:183955000-183956800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:183955000-183959000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:183955000-183971200	Weak transcription	Right Atrium	heart
23	chr1:183955200-183955400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr1:183955200-183955600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:183955200-183958800	Weak transcription	HepG2	liver

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