Variant report

Variant	rs10797932
Chromosome Location	chr1:183981972-183981973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:183966449..183970742-chr1:183981274..183983933,4	K562	blood:
2	chr1:183971472..183974918-chr1:183978540..183982820,5	K562	blood:
3	chr1:183968128..183970872-chr1:183981037..183985172,5	K562	blood:
4	chr1:183978007..183979662-chr1:183981076..183984344,3	K562	blood:
5	chr1:183978007..183980977-chr1:183981076..183984748,5	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10752927	0.88[CEU][hapmap];0.96[JPT][hapmap];0.82[ASN][1000 genomes]
rs10797925	0.81[ASN][1000 genomes]
rs10797926	0.81[ASN][1000 genomes]
rs10797927	0.82[ASN][1000 genomes]
rs10797928	0.88[CEU][hapmap];0.96[JPT][hapmap];0.82[ASN][1000 genomes]
rs10797929	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10797930	0.94[ASN][1000 genomes]
rs10911477	0.81[ASN][1000 genomes]
rs10911480	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10911481	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10911482	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10911483	0.81[ASN][1000 genomes]
rs10911484	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10911485	0.94[ASN][1000 genomes]
rs10911486	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12021841	0.81[ASN][1000 genomes]
rs12023778	0.81[ASN][1000 genomes]
rs12027096	0.94[ASN][1000 genomes]
rs12028482	0.82[ASN][1000 genomes]
rs12030903	0.94[ASN][1000 genomes]
rs12030924	0.94[ASN][1000 genomes]
rs12034897	0.94[ASN][1000 genomes]
rs12034962	0.94[ASN][1000 genomes]
rs12042354	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12044468	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12059407	0.82[ASN][1000 genomes]
rs12060999	0.82[ASN][1000 genomes]
rs12061041	0.82[ASN][1000 genomes]
rs12064779	0.94[ASN][1000 genomes]
rs12069197	0.94[ASN][1000 genomes]
rs12085344	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1475402	0.94[ASN][1000 genomes]
rs16861859	0.96[JPT][hapmap];0.81[ASN][1000 genomes]
rs1887282	0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs1887283	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1926866	0.82[ASN][1000 genomes]
rs1926868	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1998926	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2025807	0.91[JPT][hapmap]
rs2148672	0.88[CEU][hapmap];0.96[JPT][hapmap];0.82[ASN][1000 genomes]
rs2148678	0.81[ASN][1000 genomes]
rs2182623	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2182624	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3930248	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6662690	0.83[ASN][1000 genomes]
rs6698329	0.82[ASN][1000 genomes]
rs6701930	0.94[ASN][1000 genomes]
rs7410829	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs751410	0.96[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv872583	chr1:183955574-184015663	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:183972400-183983000	Weak transcription	NHDF-Ad	bronchial
2	chr1:183972600-183987800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:183976200-183990200	Weak transcription	K562	blood
4	chr1:183976800-183984600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:183978600-183982000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:183980200-183986600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:183980600-183982600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:183980800-183984400	Weak transcription	Brain Substantia Nigra	brain
9	chr1:183981000-183982200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:183981200-183982000	Enhancers	Brain Hippocampus Middle	brain
11	chr1:183981600-183982000	Enhancers	Brain Angular Gyrus	brain
12	chr1:183981600-183982000	Enhancers	Brain Cingulate Gyrus	brain

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