The 2.0 version of rSNPBase

Variant report

Variant rs10797965
Chromosome Location chr1:172293797-172293798
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172275200-172309800 Weak transcription Left Ventricle heart
2 chr1:172289800-172295200 Enhancers Fetal Stomach stomach
3 chr1:172290200-172295600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:172290600-172295400 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr1:172291800-172294800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:172292200-172294000 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:172292400-172293800 Enhancers Muscle Satellite Cultured Cells --
8 chr1:172292600-172293800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:172292600-172294000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:172292600-172294000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:172292600-172294400 Weak transcription Fetal Muscle Trunk muscle
12 chr1:172292600-172297400 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:172292800-172294600 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:172292800-172294800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr1:172292800-172303600 Weak transcription Aorta Aorta
16 chr1:172293000-172294200 Weak transcription Colon Smooth Muscle Colon
17 chr1:172293000-172294200 Weak transcription NH-A brain
18 chr1:172293000-172294600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:172293000-172294600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr1:172293000-172295200 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:172293000-172297400 Weak transcription Brain Hippocampus Middle brain
22 chr1:172293200-172294200 Enhancers A549 lung
23 chr1:172293200-172294400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:172293200-172294400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:172293200-172294400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:172293200-172294400 Weak transcription Rectal Smooth Muscle rectum
27 chr1:172293200-172294400 Weak transcription HUVEC blood vessel
28 chr1:172293200-172294400 Weak transcription NHDF-Ad bronchial
29 chr1:172293200-172294600 Weak transcription Osteobl bone
30 chr1:172293200-172294800 Weak transcription Fetal Kidney kidney
31 chr1:172293200-172294800 Weak transcription Stomach Smooth Muscle stomach
32 chr1:172293200-172294800 Weak transcription NHLF lung
33 chr1:172293400-172293800 Weak transcription Fetal Muscle Leg muscle
34 chr1:172293400-172293800 Weak transcription HMEC breast
35 chr1:172293400-172293800 Weak transcription NHEK skin
36 chr1:172293400-172294200 Weak transcription Placenta Amnion Placenta Amnion
37 chr1:172293400-172294400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:172293400-172294400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:172293400-172294400 Weak transcription Hela-S3 cervix
40 chr1:172293600-172294000 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015