Variant report

Variant	rs9425559
Chromosome Location	chr1:172298987-172298988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10158839	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10797965	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10797969	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2224567	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41481754	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425286	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425287	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425288	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963874	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart
2	chr1:172292800-172303600	Weak transcription	Aorta	Aorta
3	chr1:172295000-172307400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:172295600-172303000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172297800-172300200	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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