The 2.0 version of rSNPBase

Variant report

Variant rs9425286
Chromosome Location chr1:172294177-172294178
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172275200-172309800 Weak transcription Left Ventricle heart
2 chr1:172289800-172295200 Enhancers Fetal Stomach stomach
3 chr1:172290200-172295600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:172290600-172295400 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr1:172291800-172294800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:172292600-172294400 Weak transcription Fetal Muscle Trunk muscle
7 chr1:172292600-172297400 Weak transcription Brain Inferior Temporal Lobe brain
8 chr1:172292800-172294600 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:172292800-172294800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:172292800-172303600 Weak transcription Aorta Aorta
11 chr1:172293000-172294200 Weak transcription Colon Smooth Muscle Colon
12 chr1:172293000-172294200 Weak transcription NH-A brain
13 chr1:172293000-172294600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:172293000-172294600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:172293000-172295200 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr1:172293000-172297400 Weak transcription Brain Hippocampus Middle brain
17 chr1:172293200-172294200 Enhancers A549 lung
18 chr1:172293200-172294400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:172293200-172294400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:172293200-172294400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:172293200-172294400 Weak transcription Rectal Smooth Muscle rectum
22 chr1:172293200-172294400 Weak transcription HUVEC blood vessel
23 chr1:172293200-172294400 Weak transcription NHDF-Ad bronchial
24 chr1:172293200-172294600 Weak transcription Osteobl bone
25 chr1:172293200-172294800 Weak transcription Fetal Kidney kidney
26 chr1:172293200-172294800 Weak transcription Stomach Smooth Muscle stomach
27 chr1:172293200-172294800 Weak transcription NHLF lung
28 chr1:172293400-172294200 Weak transcription Placenta Amnion Placenta Amnion
29 chr1:172293400-172294400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:172293400-172294400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:172293400-172294400 Weak transcription Hela-S3 cervix
32 chr1:172293800-172294200 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:172293800-172294200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:172293800-172295000 Enhancers Fetal Muscle Leg muscle
35 chr1:172293800-172295600 Enhancers HMEC breast
36 chr1:172293800-172295600 Enhancers NHEK skin
37 chr1:172294000-172295000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr1:172294000-172295400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:172294000-172295400 Enhancers Fetal Lung lung

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Last update: Aug 31, 2015