Variant report

Variant	rs10801226
Chromosome Location	chr1:193646322-193646323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:193645940-193647019	SK-N-SH	brain:	n/a	n/a
2	JUND	chr1:193646029-193646788	SK-N-SH	brain:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
3	TEAD4	chr1:193646153-193646808	SK-N-SH	brain:	n/a	n/a
4	FOSL2	chr1:193646067-193646621	SK-N-SH	brain:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
5	GATA3	chr1:193646225-193646673	MCF-7	breast:	n/a	n/a
6	FOS	chr1:193646186-193646694	Hela-S3	cervix:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
7	ZKSCAN1	chr1:193646156-193646429	Hela-S3	cervix:	n/a	n/a
8	EP300	chr1:193646135-193646926	SK-N-SH	brain:	n/a	chr1:193646322-193646331
9	EP300	chr1:193646194-193646642	SK-N-SH_RA	brain:	n/a	chr1:193646322-193646331
10	TEAD4	chr1:193646182-193646756	SK-N-SH	brain:	n/a	n/a
11	TCF12	chr1:193645986-193646932	SK-N-SH	brain:	n/a	n/a
12	TCF12	chr1:193645969-193646824	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr1:193646138-193646707	SK-N-SH	brain:	n/a	n/a
14	PBX3	chr1:193646116-193646753	SK-N-SH	brain:	n/a	n/a
15	JUND	chr1:193646086-193646695	SK-N-SH	brain:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
16	RXRA	chr1:193646088-193646688	SK-N-SH	brain:	n/a	n/a
17	GATA3	chr1:193645969-193646937	SK-N-SH	brain:	n/a	n/a
18	GATA2	chr1:193646227-193646715	HUVEC	blood vessel:	n/a	n/a
19	NFIC	chr1:193646014-193646823	SK-N-SH	brain:	n/a	n/a
20	EP300	chr1:193646104-193646876	SK-N-SH	brain:	n/a	chr1:193646322-193646331
21	FOS	chr1:193646226-193646453	MCF10A-Er-Src	breast:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
22	JUND	chr1:193646011-193646772	SK-N-SH	brain:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
23	FOS	chr1:193646157-193646484	MCF10A-Er-Src	breast:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
24	FOS	chr1:193646167-193646485	MCF10A-Er-Src	breast:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
25	FOSL2	chr1:193646061-193646758	SK-N-SH	brain:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
26	FOS	chr1:193646170-193646496	MCF10A-Er-Src	breast:	n/a	chr1:193646321-193646332 chr1:193646322-193646331 chr1:193646319-193646330 chr1:193646324-193646331
27	PBX3	chr1:193646043-193646751	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193644387..193646892-chr1:193648522..193650062,2	K562	blood:

Variant related genes	Relation type
ENSG00000226640	TF binding region

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10436892	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10465598	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10494690	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10737629	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10754065	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10754070	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754071	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754073	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801209	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10801212	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10801213	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10801221	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801224	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801229	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10801230	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10801238	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801239	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801240	0.82[ASN][1000 genomes]
rs10801241	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801242	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801243	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10921393	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10921397	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921399	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921402	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921403	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921405	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921406	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10921407	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12022959	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12024767	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12035314	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12040352	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12044024	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12408312	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12410414	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12411273	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1328193	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1328194	0.88[CEU][hapmap]
rs1339314	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1339315	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1339320	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1410395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410396	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410397	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410399	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410400	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410402	0.92[AFR][1000 genomes]
rs1556901	0.92[AFR][1000 genomes]
rs1578121	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578122	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578126	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582153	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887726	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1981205	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1981206	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1981207	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1999034	0.81[CEU][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap]
rs2039759	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2149177	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2370437	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2370443	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370446	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2887756	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34743399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35091853	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4142209	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4290042	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4405124	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4495677	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657755	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4657759	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4657760	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4657761	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4657762	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4657876	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657880	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6671045	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673280	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap]
rs6683700	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684853	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6686086	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693917	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7413068	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7527158	0.82[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs7527278	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7550356	0.95[CEU][hapmap]
rs7550917	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7552269	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7553889	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs927981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958958	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9660742	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs970212	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs982101	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs986765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986766	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193643400-193647400	Enhancers	Hela-S3	cervix
2	chr1:193644000-193646800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:193644000-193647800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:193644400-193648800	Weak transcription	Small Intestine	intestine
5	chr1:193645200-193646600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:193645400-193646800	Weak transcription	Fetal Intestine Large	intestine
7	chr1:193646200-193647200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links