Variant report

Variant	rs1999034
Chromosome Location	chr1:193702204-193702205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10494690	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10754073	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10801226	0.81[CEU][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap]
rs10801229	0.87[EUR][1000 genomes]
rs10801230	0.87[EUR][1000 genomes]
rs10801238	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10801239	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10801240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10801241	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10801242	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10801243	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10921422	0.81[CEU][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12024767	0.87[EUR][1000 genomes]
rs12035314	0.83[EUR][1000 genomes]
rs12040352	0.92[CEU][hapmap]
rs12408312	0.87[EUR][1000 genomes]
rs12410982	0.81[CEU][hapmap]
rs1328193	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1328194	0.92[CEU][hapmap]
rs1339314	0.84[EUR][1000 genomes]
rs2149177	0.87[EUR][1000 genomes]
rs4290042	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4405124	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4657759	0.86[EUR][1000 genomes]
rs4657760	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4657761	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4657762	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6673280	0.89[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.90[MEX][hapmap]
rs7527158	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs7527278	0.83[CEU][hapmap]
rs7550356	0.86[CEU][hapmap]
rs7552269	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv441729	chr1:193661018-193710376	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3693068	chr1:193661626-193709696	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv872832	chr1:193661626-193850407	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv34261	chr1:193663276-193710196	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34863	chr1:193663276-193710196	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv872833	chr1:193681625-193774083	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv430058	chr1:193684343-193702343	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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