Variant report

Variant	rs10801239
Chromosome Location	chr1:193699117-193699118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10465598	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10494690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754070	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10754071	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10754073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801221	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801224	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801226	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801229	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10801230	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10801238	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801240	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10801241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801243	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921397	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10921399	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10921402	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10921403	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10921405	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10921407	0.82[ASN][1000 genomes]
rs12022959	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12024767	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12035314	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12044024	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12408312	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12410414	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12411273	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1328193	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1339314	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1339315	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1410395	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1410396	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1410397	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1410399	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1410400	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1578126	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1981205	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1981206	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1981207	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2149177	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370443	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2370446	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34743399	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4142209	0.80[EUR][1000 genomes]
rs4290042	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405124	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4495677	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4657759	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4657760	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4657761	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4657762	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4657876	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4657880	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6671045	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6683700	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6686086	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6693917	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7413068	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7547559	0.88[AFR][1000 genomes]
rs7550917	0.82[EUR][1000 genomes]
rs7552269	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7553889	0.81[EUR][1000 genomes]
rs927981	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9660742	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs982101	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs986765	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs986766	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv441729	chr1:193661018-193710376	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3693068	chr1:193661626-193709696	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv872832	chr1:193661626-193850407	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv34261	chr1:193663276-193710196	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34863	chr1:193663276-193710196	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv872833	chr1:193681625-193774083	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv430058	chr1:193684343-193702343	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193698600-193699400	Enhancers	Fetal Heart	heart
2	chr1:193698600-193699600	Flanking Active TSS	A549	lung
3	chr1:193698600-193700400	Enhancers	Hela-S3	cervix

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