Variant report

Variant	rs7547559
Chromosome Location	chr1:193661878-193661879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:193661705-193662086	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000237011	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10465598	0.92[AFR][1000 genomes]
rs10494690	0.88[AFR][1000 genomes]
rs10754073	0.88[AFR][1000 genomes]
rs10801208	0.85[EUR][1000 genomes]
rs10801211	0.88[EUR][1000 genomes]
rs10801230	0.86[AFR][1000 genomes]
rs10801238	0.87[AFR][1000 genomes]
rs10801239	0.88[AFR][1000 genomes]
rs10801240	0.82[AFR][1000 genomes]
rs10801241	0.88[AFR][1000 genomes]
rs10801242	0.88[AFR][1000 genomes]
rs10921400	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12024767	0.90[AFR][1000 genomes]
rs12028044	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12408312	0.91[AFR][1000 genomes]
rs12410414	0.84[AFR][1000 genomes]
rs1328193	0.88[AFR][1000 genomes]
rs1339314	0.90[AFR][1000 genomes]
rs1339315	0.91[AFR][1000 genomes]
rs1410402	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1556901	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1578127	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16835709	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031831	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2370445	0.86[EUR][1000 genomes]
rs2370446	0.91[AFR][1000 genomes]
rs34745330	0.86[EUR][1000 genomes]
rs4290042	0.88[AFR][1000 genomes]
rs4405124	0.83[AFR][1000 genomes]
rs4657759	0.90[AFR][1000 genomes]
rs4657761	0.87[AFR][1000 genomes]
rs4657762	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1012595	chr1:193648643-193682630	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv441729	chr1:193661018-193710376	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3693068	chr1:193661626-193709696	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv872832	chr1:193661626-193850407	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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