Variant report
| Variant | rs10801800 |
|---|---|
| Chromosome Location | chr1:90761699-90761700 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10754300 | 0.88[ASN][1000 genomes] |
| rs10922815 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10922818 | 0.87[ASN][1000 genomes] |
| rs10922819 | 0.87[ASN][1000 genomes] |
| rs10922820 | 0.97[EUR][1000 genomes] |
| rs12021593 | 0.87[ASN][1000 genomes] |
| rs12046150 | 0.85[ASN][1000 genomes] |
| rs12058249 | 0.87[ASN][1000 genomes] |
| rs12060187 | 0.87[ASN][1000 genomes] |
| rs12733919 | 0.81[ASN][1000 genomes] |
| rs3923534 | 0.87[ASN][1000 genomes] |
| rs4128959 | 0.84[ASN][1000 genomes] |
| rs4233434 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4233435 | 0.87[ASN][1000 genomes] |
| rs4417049 | 0.87[ASN][1000 genomes] |
| rs4418580 | 0.85[ASN][1000 genomes] |
| rs4507991 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4520404 | 0.94[EUR][1000 genomes] |
| rs4535988 | 0.87[ASN][1000 genomes] |
| rs4623679 | 0.87[ASN][1000 genomes] |
| rs4658150 | 0.81[ASN][1000 genomes] |
| rs6428583 | 0.80[EUR][1000 genomes] |
| rs6428584 | 0.88[ASN][1000 genomes] |
| rs6679092 | 0.85[ASN][1000 genomes] |
| rs6689390 | 0.87[ASN][1000 genomes] |
| rs6689724 | 0.87[ASN][1000 genomes] |
| rs6690274 | 0.88[ASN][1000 genomes] |
| rs6694176 | 0.85[ASN][1000 genomes] |
| rs7531149 | 0.88[ASN][1000 genomes] |
| rs7548218 | 0.89[ASN][1000 genomes] |
| rs9651073 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv546803 | chr1:90679734-90777717 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv524317 | chr1:90729744-90836739 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv946065 | chr1:90752199-90763787 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:90761200-90761800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
