Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10922831	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12022847	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12043844	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12043900	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12082931	0.89[EUR][1000 genomes]
rs12083345	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28393962	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34245845	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34487333	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35288412	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35895061	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4074584	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4268341	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4418577	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4548420	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4551580	0.94[ASN][1000 genomes]
rs4557956	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4564125	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6662232	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6673769	0.94[ASN][1000 genomes]
rs6674478	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7528896	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7550206	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1000787	chr1:90809476-90874481	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90810000-90811600	Enhancers	GM12878-XiMat	blood
2	chr1:90810200-90813400	Enhancers	Dnd41	blood

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