Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10801801	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10922831	0.84[AMR][1000 genomes]
rs12043844	0.84[AMR][1000 genomes]
rs12043900	0.84[AMR][1000 genomes]
rs12083345	0.84[AMR][1000 genomes]
rs12754978	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28393962	0.84[AMR][1000 genomes]
rs34245845	0.82[AMR][1000 genomes]
rs34487333	0.84[AMR][1000 genomes]
rs35288412	0.87[AMR][1000 genomes]
rs35895061	0.85[AMR][1000 genomes]
rs4074584	0.84[AMR][1000 genomes]
rs4268341	0.84[AMR][1000 genomes]
rs4418577	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4548420	0.89[ASN][1000 genomes]
rs4551580	0.98[ASN][1000 genomes]
rs4557956	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4564125	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6662232	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673769	0.98[ASN][1000 genomes]
rs6674478	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7528896	0.83[AMR][1000 genomes]
rs7550206	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90804400-90807000	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:90805000-90806600	Enhancers	Primary T cells from cord blood	blood
3	chr1:90805000-90806600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr1:90805000-90806600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:90805200-90806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:90805200-90806400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr1:90805400-90806600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr1:90805600-90806600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:90805800-90806200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:90805800-90806400	Enhancers	GM12878-XiMat	blood
11	chr1:90805800-90806400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
12	chr1:90806000-90806400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr1:90806000-90806600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:90806000-90807200	Enhancers	Dnd41	blood
15	chr1:90806000-90807600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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