Variant report

Variant	rs12083345
Chromosome Location	chr1:90790852-90790853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10801801	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10922831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12022847	0.84[AMR][1000 genomes]
rs12043844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12043900	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12082931	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34245845	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34487333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493662	0.85[ASN][1000 genomes]
rs35288412	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35895061	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3886071	0.86[ASN][1000 genomes]
rs4074584	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4418577	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4453022	0.98[ASN][1000 genomes]
rs4489539	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs4557956	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4564125	0.83[AMR][1000 genomes]
rs4625266	0.98[ASN][1000 genomes]
rs61770629	0.90[ASN][1000 genomes]
rs6662232	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72954808	0.83[ASN][1000 genomes]
rs7528896	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550206	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550989	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90790000-90791000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:90790000-90791600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:90790200-90791800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:90790200-90791800	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:90790400-90791800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:90790800-90792000	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links