Variant report
| Variant | rs61770629 |
|---|---|
| Chromosome Location | chr1:90755625-90755626 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10922831 | 0.90[ASN][1000 genomes] |
| rs12043844 | 0.88[ASN][1000 genomes] |
| rs12043900 | 0.89[ASN][1000 genomes] |
| rs12082931 | 0.90[ASN][1000 genomes] |
| rs12083345 | 0.90[ASN][1000 genomes] |
| rs28393962 | 0.88[ASN][1000 genomes] |
| rs34245845 | 0.88[ASN][1000 genomes] |
| rs34311402 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34487333 | 0.90[ASN][1000 genomes] |
| rs34493662 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35288412 | 0.85[ASN][1000 genomes] |
| rs35895061 | 0.81[ASN][1000 genomes] |
| rs3886071 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4074584 | 0.91[ASN][1000 genomes] |
| rs4268341 | 0.90[ASN][1000 genomes] |
| rs4453022 | 0.88[ASN][1000 genomes] |
| rs4489539 | 0.91[ASN][1000 genomes] |
| rs4625266 | 0.88[ASN][1000 genomes] |
| rs57736521 | 0.85[ASN][1000 genomes] |
| rs72954808 | 0.91[ASN][1000 genomes] |
| rs7528896 | 0.90[ASN][1000 genomes] |
| rs7550206 | 0.90[ASN][1000 genomes] |
| rs7550989 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv546803 | chr1:90679734-90777717 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv524317 | chr1:90729744-90836739 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv946065 | chr1:90752199-90763787 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:90753600-90756400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
