Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10922831	0.85[ASN][1000 genomes]
rs12043844	0.83[ASN][1000 genomes]
rs12043900	0.84[ASN][1000 genomes]
rs12049311	0.82[AMR][1000 genomes]
rs12082931	0.85[ASN][1000 genomes]
rs12083345	0.85[ASN][1000 genomes]
rs28393962	0.87[ASN][1000 genomes]
rs34245845	0.87[ASN][1000 genomes]
rs34311402	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34487333	0.85[ASN][1000 genomes]
rs3886071	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4074584	0.86[ASN][1000 genomes]
rs4268341	0.85[ASN][1000 genomes]
rs4453022	0.83[ASN][1000 genomes]
rs4489539	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4625266	0.83[ASN][1000 genomes]
rs57736521	0.80[ASN][1000 genomes]
rs61770629	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72954808	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7528896	0.85[ASN][1000 genomes]
rs7550206	0.85[ASN][1000 genomes]
rs7550989	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90706600-90707600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:90707400-90707600	Enhancers	HepG2	liver
3	chr1:90707400-90710400	Enhancers	Rectal Mucosa Donor 31	rectum

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