Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10922831	0.98[ASN][1000 genomes]
rs12043844	0.95[ASN][1000 genomes]
rs12043900	0.97[ASN][1000 genomes]
rs12082931	0.98[ASN][1000 genomes]
rs12083345	0.98[ASN][1000 genomes]
rs28393962	0.95[ASN][1000 genomes]
rs34245845	0.95[ASN][1000 genomes]
rs34487333	0.98[ASN][1000 genomes]
rs34493662	0.83[ASN][1000 genomes]
rs35288412	0.92[ASN][1000 genomes]
rs35895061	0.88[ASN][1000 genomes]
rs3886071	0.84[ASN][1000 genomes]
rs4074584	0.97[ASN][1000 genomes]
rs4268341	0.98[ASN][1000 genomes]
rs4453022	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489539	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs61770629	0.88[ASN][1000 genomes]
rs72954808	0.81[ASN][1000 genomes]
rs7528896	0.98[ASN][1000 genomes]
rs7550206	0.98[ASN][1000 genomes]
rs7550989	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90790000-90791000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:90790000-90791600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:90790200-90791800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:90790200-90791800	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:90790400-90790800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr1:90790400-90791800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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