Variant report

Variant	rs10801850
Chromosome Location	chr1:91746297-91746298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91745154..91747996-chr1:91866350..91867875,2	K562	blood:
2	chr1:91746223..91748167-chr1:91868929..91871245,2	K562	blood:

Variant related genes	Relation type
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10493845	0.87[AMR][1000 genomes]
rs10801851	0.81[AFR][1000 genomes]
rs10801862	0.87[AMR][1000 genomes]
rs10923007	0.86[AMR][1000 genomes]
rs10923010	0.88[AMR][1000 genomes]
rs1158436	0.88[AMR][1000 genomes]
rs12093493	0.87[AMR][1000 genomes]
rs12562636	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1307751	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1583817	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583818	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1595868	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2033915	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs281956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs281959	0.89[AMR][1000 genomes]
rs281966	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs281968	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs281979	0.88[AMR][1000 genomes]
rs281990	0.87[AMR][1000 genomes]
rs281992	0.88[AMR][1000 genomes]
rs281996	0.87[AMR][1000 genomes]
rs281997	0.86[AMR][1000 genomes]
rs281998	0.87[AMR][1000 genomes]
rs382467	0.89[AMR][1000 genomes]
rs582737	0.84[AMR][1000 genomes]
rs628897	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs661989	0.84[AMR][1000 genomes]
rs6671415	0.81[AMR][1000 genomes]
rs6678319	0.84[AMR][1000 genomes]
rs6685750	0.83[AMR][1000 genomes]
rs672449	0.83[AMR][1000 genomes]
rs67274437	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs678752	0.86[AMR][1000 genomes]
rs681589	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs683765	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs694581	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72726276	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7417055	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7521314	0.87[AMR][1000 genomes]
rs9660037	0.84[ASN][1000 genomes]
rs9662393	0.84[ASN][1000 genomes]
rs9724763	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91719600-91748400	Weak transcription	Ovary	ovary
2	chr1:91719800-91748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:91738200-91748400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:91744400-91748400	Weak transcription	K562	blood

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