Variant report

Variant	rs683765
Chromosome Location	chr1:91710453-91710454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91631396..91632261-chr1:91710239..91710972,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10493845	0.87[AMR][1000 genomes]
rs10801850	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10801862	0.87[AMR][1000 genomes]
rs10923007	0.86[AMR][1000 genomes]
rs10923010	0.91[CHB][hapmap];0.88[AMR][1000 genomes]
rs1158436	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs12093493	0.87[AMR][1000 genomes]
rs12562636	0.84[AMR][1000 genomes]
rs1307751	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583817	0.85[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1583818	0.89[CEU][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1595868	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2033915	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs281956	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs281959	0.85[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs281966	0.94[CEU][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs281968	0.85[CEU][hapmap];0.84[CHB][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs281979	0.85[AMR][1000 genomes]
rs281990	0.84[AMR][1000 genomes]
rs281992	0.85[AMR][1000 genomes]
rs281996	0.87[AMR][1000 genomes]
rs281997	0.86[AMR][1000 genomes]
rs281998	0.84[CHB][hapmap];0.87[AMR][1000 genomes]
rs382467	0.82[AMR][1000 genomes]
rs582737	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59973709	0.94[ASN][1000 genomes]
rs628897	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs661989	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs665098	0.82[AFR][1000 genomes]
rs672449	0.81[AMR][1000 genomes]
rs67274437	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs678752	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs681589	0.94[CEU][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs694581	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72726276	0.84[AMR][1000 genomes]
rs7417055	0.81[CEU][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7521314	0.87[AMR][1000 genomes]
rs9660037	0.81[ASN][1000 genomes]
rs9662393	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91709400-91710600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:91709600-91710600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:91710200-91711600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:91710400-91710800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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