Variant report
| Variant | rs59973709 |
|---|---|
| Chromosome Location | chr1:91706288-91706289 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10157861 | 0.82[AMR][1000 genomes] |
| rs12566254 | 0.84[AMR][1000 genomes] |
| rs12568483 | 0.88[AMR][1000 genomes] |
| rs1307751 | 0.94[ASN][1000 genomes] |
| rs1583817 | 0.83[ASN][1000 genomes] |
| rs1595868 | 0.94[ASN][1000 genomes] |
| rs169472 | 0.82[AMR][1000 genomes] |
| rs1823868 | 0.84[AMR][1000 genomes] |
| rs281935 | 0.84[AMR][1000 genomes] |
| rs281956 | 0.83[ASN][1000 genomes] |
| rs281959 | 0.91[ASN][1000 genomes] |
| rs281966 | 0.91[ASN][1000 genomes] |
| rs281968 | 0.94[ASN][1000 genomes] |
| rs34390075 | 0.80[AMR][1000 genomes] |
| rs4658202 | 0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4658204 | 0.82[AMR][1000 genomes] |
| rs4658212 | 0.82[AMR][1000 genomes] |
| rs56738625 | 0.84[AMR][1000 genomes] |
| rs628897 | 0.94[ASN][1000 genomes] |
| rs661989 | 0.93[ASN][1000 genomes] |
| rs67274437 | 0.94[ASN][1000 genomes] |
| rs678752 | 0.97[ASN][1000 genomes] |
| rs681589 | 0.94[ASN][1000 genomes] |
| rs683765 | 0.94[ASN][1000 genomes] |
| rs694581 | 0.97[ASN][1000 genomes] |
| rs72970318 | 0.84[AMR][1000 genomes] |
| rs72970328 | 0.80[AMR][1000 genomes] |
| rs7513687 | 0.86[AMR][1000 genomes] |
| rs876761 | 0.88[AMR][1000 genomes] |
| rs9660037 | 0.86[ASN][1000 genomes] |
| rs9662393 | 0.86[ASN][1000 genomes] |
| rs9724763 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949516 | chr1:91644418-92109261 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs59973709 | HFM1 | cis | Artery Tibial | GTEx |
| rs59973709 | HFM1 | cis | Nerve Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:91706000-91707000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr1:91706200-91706600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
