Variant report

Variant	rs4658202
Chromosome Location	chr1:91672885-91672886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10157861	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12564233	0.81[EUR][1000 genomes]
rs12566254	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12568445	0.81[EUR][1000 genomes]
rs12568483	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs169472	0.88[AMR][1000 genomes]
rs17131419	0.81[EUR][1000 genomes]
rs1823868	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs281935	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34390075	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4084488	0.81[EUR][1000 genomes]
rs4509624	0.81[EUR][1000 genomes]
rs4658204	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4658212	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4658220	0.81[EUR][1000 genomes]
rs4658222	0.81[EUR][1000 genomes]
rs56738625	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58424833	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59973709	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs661989	0.85[ASN][1000 genomes]
rs678752	0.80[ASN][1000 genomes]
rs694581	0.80[ASN][1000 genomes]
rs72970318	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72970328	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72970335	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72970337	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7513687	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs876761	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9660037	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9662393	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9724763	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs4658202	HFM1	cis	Artery Aorta	GTEx
rs4658202	HFM1	cis	Nerve Tibial	GTEx
rs4658202	HFM1	cis	Stomach	GTEx
rs4658202	HFM1	cis	Artery Tibial	GTEx
rs4658202	HFM1	cis	lung	GTEx
rs4658202	HFM1	cis	Esophagus Muscularis	GTEx
rs4658202	HFM1	cis	Thyroid	GTEx
rs4658202	HFM1	cis	Adipose Subcutaneous	GTEx
rs4658202	HFM1	cis	Muscle Skeletal	GTEx
rs4658202	HFM1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91672800-91673000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links