Variant report

Variant	rs10157861
Chromosome Location	chr1:91764488-91764489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10493845	0.86[ASN][1000 genomes]
rs10801862	0.86[ASN][1000 genomes]
rs10923007	0.86[ASN][1000 genomes]
rs10923010	0.86[ASN][1000 genomes]
rs1158436	0.84[ASN][1000 genomes]
rs12093493	0.84[ASN][1000 genomes]
rs12562636	0.91[ASN][1000 genomes]
rs12563247	0.84[ASN][1000 genomes]
rs12564233	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12566254	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12566743	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12568445	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12568483	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583817	0.81[ASN][1000 genomes]
rs169472	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17131417	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17131419	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1823868	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs281935	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs281956	0.81[ASN][1000 genomes]
rs281979	0.86[ASN][1000 genomes]
rs281992	0.86[ASN][1000 genomes]
rs281996	0.84[ASN][1000 genomes]
rs281998	0.86[ASN][1000 genomes]
rs282014	0.81[EUR][1000 genomes]
rs282050	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs282053	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34390075	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4084488	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4509624	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4658202	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4658204	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4658212	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4658219	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4658220	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4658221	0.91[EUR][1000 genomes]
rs4658222	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56738625	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58424833	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59078007	0.95[EUR][1000 genomes]
rs59973709	0.82[AMR][1000 genomes]
rs6671415	0.97[ASN][1000 genomes]
rs6678319	0.84[ASN][1000 genomes]
rs6685750	0.97[ASN][1000 genomes]
rs672449	0.91[ASN][1000 genomes]
rs72726276	0.91[ASN][1000 genomes]
rs72970318	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72970328	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72970335	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72970337	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7513687	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7521314	0.86[ASN][1000 genomes]
rs876761	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9324372	0.88[EUR][1000 genomes]
rs9660037	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9662393	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9700732	0.93[ASN][1000 genomes]
rs9724763	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs988203	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91749000-91774600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links