Variant report

Variant	rs10923010
Chromosome Location	chr1:91777923-91777924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10157861	0.86[ASN][1000 genomes]
rs10493845	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10801850	0.88[AMR][1000 genomes]
rs10801862	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10923007	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158436	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12093493	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562636	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12563247	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12564233	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12566254	0.94[ASN][1000 genomes]
rs12566743	0.86[ASN][1000 genomes]
rs12568445	0.86[ASN][1000 genomes]
rs12568483	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1307751	0.81[AMR][1000 genomes]
rs1583817	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1583818	0.83[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs169472	0.83[ASN][1000 genomes]
rs17131417	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17131419	0.85[ASN][1000 genomes]
rs182218	0.86[ASN][1000 genomes]
rs1823868	0.97[ASN][1000 genomes]
rs192519	0.92[JPT][hapmap]
rs2033915	0.85[AMR][1000 genomes]
rs281935	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs281956	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs281959	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs281966	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs281968	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs281979	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs281990	0.96[CEU][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs281992	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs281996	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs281997	0.96[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs281998	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs282020	0.86[ASN][1000 genomes]
rs282053	0.90[ASN][1000 genomes]
rs34390075	0.94[ASN][1000 genomes]
rs382467	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4084488	0.84[ASN][1000 genomes]
rs4509624	0.86[ASN][1000 genomes]
rs4658212	0.97[ASN][1000 genomes]
rs4658219	0.83[ASN][1000 genomes]
rs4658220	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4658221	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4658222	1.00[JPT][hapmap]
rs510313	0.81[AMR][1000 genomes]
rs56738625	0.86[ASN][1000 genomes]
rs58424833	0.91[ASN][1000 genomes]
rs59078007	0.86[ASN][1000 genomes]
rs628897	0.86[AMR][1000 genomes]
rs6671415	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6678319	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6685750	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs672449	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67274437	0.86[AMR][1000 genomes]
rs678752	0.82[AMR][1000 genomes]
rs681589	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs683765	0.88[AMR][1000 genomes]
rs694581	0.82[AMR][1000 genomes]
rs72726276	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72970318	0.94[ASN][1000 genomes]
rs72970328	0.94[ASN][1000 genomes]
rs72970335	0.91[ASN][1000 genomes]
rs72970337	0.91[ASN][1000 genomes]
rs7417055	0.85[JPT][hapmap]
rs7513687	0.97[ASN][1000 genomes]
rs7521314	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876761	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9324372	0.92[JPT][hapmap]
rs9660037	0.82[ASN][1000 genomes]
rs9662393	0.82[ASN][1000 genomes]
rs9724763	0.83[ASN][1000 genomes]
rs988203	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1006022	chr1:91768640-91831196	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv871685	chr1:91774458-91849219	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91772800-91793800	Weak transcription	Left Ventricle	heart
2	chr1:91773600-91796200	Weak transcription	Fetal Kidney	kidney
3	chr1:91774600-91778800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr1:91774800-91794400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:91775000-91793800	Weak transcription	Pancreas	Pancrea
6	chr1:91775200-91794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:91776600-91793800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:91777000-91780400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:91777200-91778000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:91777200-91778000	Strong transcription	Brain Germinal Matrix	brain
11	chr1:91777200-91778000	Strong transcription	Fetal Lung	lung
12	chr1:91777200-91778200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:91777200-91778600	Strong transcription	Fetal Stomach	stomach
14	chr1:91777400-91778000	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr1:91777400-91778600	Strong transcription	Ovary	ovary
16	chr1:91777600-91778000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr1:91777600-91778000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:91777600-91781400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:91777600-91790600	Weak transcription	Fetal Brain Female	brain
20	chr1:91777600-91790600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:91777600-91790800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr1:91777600-91794000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:91777800-91778000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:91777800-91778000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:91777800-91778000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:91777800-91794600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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