Variant report

Variant	rs10803861
Chromosome Location	chr2:172169493-172169494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172016874..172018492-chr2:172168986..172171114,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCAF17-2	chr2:172167776-172169682	ENSG00000250738

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10205459	1.00[AFR][1000 genomes]
rs1024872	1.00[AFR][1000 genomes]
rs1178011	1.00[AFR][1000 genomes]
rs1558962	1.00[AFR][1000 genomes]
rs2080717	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172144200-172171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172163800-172181400	Weak transcription	Gastric	stomach
3	chr2:172165600-172179400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:172167200-172169600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr2:172167200-172170400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr2:172167400-172169600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr2:172167400-172169800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:172167400-172172400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:172167600-172172400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:172167600-172174000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:172168600-172169600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
12	chr2:172168600-172169600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:172168800-172172400	Weak transcription	A549	lung
14	chr2:172168800-172174800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:172169000-172172400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:172169000-172174800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:172169200-172169600	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:172169200-172169800	Weak transcription	Fetal Stomach	stomach
19	chr2:172169200-172172400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:172169200-172175000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:172169200-172175000	Weak transcription	Adipose Nuclei	Adipose
22	chr2:172169200-172175600	Weak transcription	HepG2	liver
23	chr2:172169200-172178800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:172169200-172182400	Weak transcription	Aorta	Aorta
25	chr2:172169200-172193400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:172169400-172170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:172169400-172173400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:172169400-172179400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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