Variant report

Variant	rs1178011
Chromosome Location	chr2:172214513-172214514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10205459	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1024872	1.00[AFR][1000 genomes]
rs10803861	1.00[AFR][1000 genomes]
rs1178007	1.00[YRI][hapmap]
rs1558962	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2080717	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1003130	chr2:172189196-172237268	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172172800-172222400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:172181000-172221600	Weak transcription	K562	blood
3	chr2:172193600-172218200	Weak transcription	HepG2	liver
4	chr2:172203400-172217200	Weak transcription	Small Intestine	intestine
5	chr2:172203800-172218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:172204600-172218600	Weak transcription	Ovary	ovary
7	chr2:172204800-172222400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr2:172205000-172215200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr2:172205000-172216600	Weak transcription	Adipose Nuclei	Adipose
10	chr2:172205000-172217200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:172205000-172221400	Weak transcription	NHEK	skin
12	chr2:172205000-172221600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:172205000-172221800	Weak transcription	Osteobl	bone
14	chr2:172205000-172222400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:172205200-172218400	Weak transcription	Psoas Muscle	Psoas
16	chr2:172205200-172218400	Weak transcription	NHDF-Ad	bronchial
17	chr2:172205200-172221600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:172205200-172224000	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:172211000-172242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:172211600-172214800	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr2:172211600-172215000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr2:172211600-172216000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:172211800-172215000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr2:172211800-172215000	ZNF genes & repeats	Fetal Stomach	stomach
25	chr2:172211800-172215200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:172211800-172215600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:172211800-172217000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:172212200-172214600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr2:172212200-172215400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr2:172212400-172221600	Weak transcription	HMEC	breast
31	chr2:172212400-172222400	Weak transcription	Aorta	Aorta
32	chr2:172212400-172231400	Weak transcription	Esophagus	oesophagus
33	chr2:172212600-172214600	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr2:172212600-172215600	ZNF genes & repeats	GM12878-XiMat	blood
35	chr2:172213000-172215200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr2:172213000-172215800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr2:172213000-172215800	ZNF genes & repeats	Dnd41	blood
38	chr2:172213800-172214600	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr2:172214000-172215000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
40	chr2:172214200-172214800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:172214200-172215000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr2:172214200-172215400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:172214200-172215800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:172214200-172226000	Weak transcription	Left Ventricle	heart
45	chr2:172214400-172214800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:172214400-172215800	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr2:172214400-172216000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:172214400-172217200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:172214400-172222400	Weak transcription	A549	lung

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