Variant report

Variant	rs1080495
Chromosome Location	chr10:93444549-93444550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:
2	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
3	chr10:93411652..93413648-chr10:93444195..93446402,2	MCF-7	breast:
4	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10786009	0.87[ASN][1000 genomes]
rs10786010	0.88[ASN][1000 genomes]
rs1080496	0.88[ASN][1000 genomes]
rs10881947	0.88[ASN][1000 genomes]
rs1539041	0.85[EUR][1000 genomes]
rs1891274	0.87[ASN][1000 genomes]
rs1986941	0.88[ASN][1000 genomes]
rs2421737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077236	0.85[ASN][1000 genomes]
rs7094498	0.88[ASN][1000 genomes]
rs7098763	0.88[ASN][1000 genomes]
rs7099557	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1080495	TNKS2-AS1	cis	Thyroid	GTEx
rs1080495	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs1080495	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs1080495	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs1080495	TNKS2-AS1	cis	lung	GTEx
rs1080495	TNKS2-AS1	cis	Artery Tibial	GTEx
rs1080495	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs1080495	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs1080495	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs1080495	TNKS2-AS1	cis	Stomach	GTEx

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427600-93448800	Weak transcription	Liver	Liver
3	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
5	chr10:93440600-93444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:93440600-93445000	Enhancers	HMEC	breast
7	chr10:93441200-93445000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
9	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
10	chr10:93442400-93446400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:93442800-93445000	Enhancers	NHLF	lung
13	chr10:93443000-93445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:93443000-93445600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:93443200-93444600	Enhancers	Osteobl	bone
16	chr10:93443200-93445000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:93443200-93445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:93443400-93444600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr10:93443400-93444600	Enhancers	NH-A	brain
20	chr10:93443400-93444800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr10:93443400-93445000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:93443400-93445000	Enhancers	A549	lung
23	chr10:93443600-93444600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr10:93443600-93444600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:93443600-93444600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:93443600-93444600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:93443600-93444600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:93443600-93444800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr10:93443800-93445000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:93443800-93445400	Enhancers	NHEK	skin
31	chr10:93444000-93445000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:93444000-93445000	Enhancers	NHDF-Ad	bronchial
33	chr10:93444000-93449400	Weak transcription	HSMM	muscle
34	chr10:93444200-93444600	Enhancers	H9 Cell Line	embryonic stem cell
35	chr10:93444200-93449000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:93444400-93444600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:93444400-93449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:93444400-93449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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