Variant report

Variant	rs2421737
Chromosome Location	chr10:93447270-93447271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93440121..93442029-chr10:93445363..93447595,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10786009	0.87[ASN][1000 genomes]
rs10786010	0.88[ASN][1000 genomes]
rs1080495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080496	0.88[ASN][1000 genomes]
rs10881947	0.88[ASN][1000 genomes]
rs1539041	0.85[EUR][1000 genomes]
rs1891274	0.87[ASN][1000 genomes]
rs1986941	0.88[ASN][1000 genomes]
rs7077236	0.85[ASN][1000 genomes]
rs7094498	0.88[ASN][1000 genomes]
rs7098763	0.88[ASN][1000 genomes]
rs7099557	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2421737	TNKS2-AS1	cis	lung	GTEx
rs2421737	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs2421737	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs2421737	TNKS2-AS1	cis	Thyroid	GTEx
rs2421737	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs2421737	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs2421737	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs2421737	TNKS2-AS1	cis	Artery Tibial	GTEx
rs2421737	TNKS2-AS1	cis	Stomach	GTEx
rs2421737	TNKS2-AS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427600-93448800	Weak transcription	Liver	Liver
3	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
4	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
5	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
6	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:93444000-93449400	Weak transcription	HSMM	muscle
8	chr10:93444200-93449000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:93444400-93449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:93444400-93449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:93444600-93448800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:93444600-93449600	Weak transcription	Osteobl	bone
13	chr10:93445000-93447600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:93445000-93447600	Weak transcription	HMEC	breast
15	chr10:93445000-93449400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:93445000-93449600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:93445000-93449600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:93445000-93449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:93445000-93449600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:93445000-93449600	Weak transcription	NHDF-Ad	bronchial
21	chr10:93445000-93449600	Weak transcription	NHLF	lung
22	chr10:93445400-93447400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:93447200-93448000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:93447200-93448000	Enhancers	NHEK	skin
25	chr10:93447200-93451600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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