Variant report

Variant	rs10805001
Chromosome Location	chr4:7550387-7550388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7540632..7544452-chr4:7547712..7552910,6	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10014162	0.88[ASN][1000 genomes]
rs10470723	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10937836	0.89[ASN][1000 genomes]
rs1107692	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721353	0.97[ASN][1000 genomes]
rs11723455	0.93[ASN][1000 genomes]
rs11736943	0.89[ASN][1000 genomes]
rs11937027	0.89[ASN][1000 genomes]
rs28468677	0.84[ASN][1000 genomes]
rs28519697	0.83[ASN][1000 genomes]
rs34030222	0.91[ASN][1000 genomes]
rs34289744	0.84[ASN][1000 genomes]
rs34445288	0.82[ASN][1000 genomes]
rs34996971	0.86[ASN][1000 genomes]
rs35707377	0.89[ASN][1000 genomes]
rs35789691	0.88[ASN][1000 genomes]
rs4339212	0.84[ASN][1000 genomes]
rs4365723	0.89[ASN][1000 genomes]
rs4591607	0.84[ASN][1000 genomes]
rs4596239	0.84[ASN][1000 genomes]
rs4637403	0.82[ASN][1000 genomes]
rs4689138	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4689139	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4689779	0.84[ASN][1000 genomes]
rs55881020	0.84[ASN][1000 genomes]
rs6815897	0.84[ASN][1000 genomes]
rs71601859	0.89[ASN][1000 genomes]
rs71601860	0.89[ASN][1000 genomes]
rs71601861	0.89[ASN][1000 genomes]
rs71601862	0.91[ASN][1000 genomes]
rs73084716	0.89[ASN][1000 genomes]
rs73214654	0.89[ASN][1000 genomes]
rs871942	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs882266	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs882267	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7547400-7550400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:7547600-7550800	Enhancers	Esophagus	oesophagus
3	chr4:7548000-7550600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr4:7548000-7550800	Enhancers	Liver	Liver
5	chr4:7549600-7550600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:7549600-7550800	Enhancers	Brain Germinal Matrix	brain
7	chr4:7550000-7550600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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