Variant report

Variant	rs71601859
Chromosome Location	chr4:7547346-7547347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7543788..7545988-chr4:7546899..7549006,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10014162	0.80[ASN][1000 genomes]
rs10470723	0.91[ASN][1000 genomes]
rs10805001	0.89[ASN][1000 genomes]
rs10937836	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1107692	0.89[ASN][1000 genomes]
rs11721353	0.90[ASN][1000 genomes]
rs11723455	0.96[ASN][1000 genomes]
rs11736943	0.82[ASN][1000 genomes]
rs11937027	0.93[ASN][1000 genomes]
rs13119421	0.82[ASN][1000 genomes]
rs16840505	0.82[ASN][1000 genomes]
rs34030222	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34289744	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34445288	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34861707	0.80[ASN][1000 genomes]
rs34996971	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35260897	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35707377	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35789691	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4339212	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4365723	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4591607	0.87[ASN][1000 genomes]
rs4596239	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4637403	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4689138	0.91[ASN][1000 genomes]
rs4689139	0.85[ASN][1000 genomes]
rs4689779	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55881020	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56345748	0.80[ASN][1000 genomes]
rs6815897	0.87[ASN][1000 genomes]
rs6835393	0.80[ASN][1000 genomes]
rs71601860	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71601861	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71601862	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73084716	0.82[ASN][1000 genomes]
rs73214654	0.82[ASN][1000 genomes]
rs7677330	0.80[ASN][1000 genomes]
rs7689754	0.80[ASN][1000 genomes]
rs7698678	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs870012	0.80[ASN][1000 genomes]
rs870013	0.80[ASN][1000 genomes]
rs871942	0.87[ASN][1000 genomes]
rs874235	0.80[ASN][1000 genomes]
rs882266	0.91[ASN][1000 genomes]
rs882267	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv461211	chr4:7530451-7548862	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv528667	chr4:7533674-7547547	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7541000-7549000	Weak transcription	Brain Angular Gyrus	brain
2	chr4:7541200-7547400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:7541200-7549000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:7541400-7548200	Weak transcription	Ovary	ovary
5	chr4:7542400-7548800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:7543000-7548000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links