Variant report

Variant	rs34861707
Chromosome Location	chr4:7570133-7570134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7568412..7571400-chr4:7581006..7582708,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10014162	0.82[ASN][1000 genomes]
rs10937836	0.83[ASN][1000 genomes]
rs11723455	0.80[ASN][1000 genomes]
rs11736943	0.84[ASN][1000 genomes]
rs13119421	0.98[ASN][1000 genomes]
rs16840505	0.98[ASN][1000 genomes]
rs28468677	0.85[ASN][1000 genomes]
rs28519697	0.84[ASN][1000 genomes]
rs28703787	0.98[ASN][1000 genomes]
rs34289744	0.89[ASN][1000 genomes]
rs34445288	0.91[ASN][1000 genomes]
rs34996971	0.87[ASN][1000 genomes]
rs35260897	0.91[ASN][1000 genomes]
rs35707377	0.83[ASN][1000 genomes]
rs35789691	0.82[ASN][1000 genomes]
rs4290892	0.98[ASN][1000 genomes]
rs4365723	0.80[ASN][1000 genomes]
rs4591607	0.89[ASN][1000 genomes]
rs4637403	0.91[ASN][1000 genomes]
rs4689139	0.84[ASN][1000 genomes]
rs4689779	0.89[ASN][1000 genomes]
rs56345748	0.96[ASN][1000 genomes]
rs6815897	0.89[ASN][1000 genomes]
rs6835393	0.96[ASN][1000 genomes]
rs6839110	0.98[ASN][1000 genomes]
rs71601859	0.80[ASN][1000 genomes]
rs71601860	0.80[ASN][1000 genomes]
rs73084716	0.84[ASN][1000 genomes]
rs73214654	0.84[ASN][1000 genomes]
rs7677330	1.00[ASN][1000 genomes]
rs7689754	0.96[ASN][1000 genomes]
rs7698678	0.92[ASN][1000 genomes]
rs870012	1.00[ASN][1000 genomes]
rs870013	1.00[ASN][1000 genomes]
rs871938	0.98[ASN][1000 genomes]
rs871942	0.89[ASN][1000 genomes]
rs874235	1.00[ASN][1000 genomes]
rs882267	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7566400-7573400	Weak transcription	Spleen	Spleen
2	chr4:7566600-7572000	Weak transcription	Brain Substantia Nigra	brain
3	chr4:7567000-7571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:7567800-7572200	Weak transcription	Fetal Brain Male	brain
5	chr4:7568200-7571600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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