Variant report

Variant	rs28703787
Chromosome Location	chr4:7567801-7567802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10014162	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10937836	0.82[ASN][1000 genomes]
rs11736943	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13119421	0.96[ASN][1000 genomes]
rs16840505	0.96[ASN][1000 genomes]
rs28468677	0.87[ASN][1000 genomes]
rs28519697	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34289744	0.87[ASN][1000 genomes]
rs34445288	0.89[ASN][1000 genomes]
rs34861707	0.98[ASN][1000 genomes]
rs34996971	0.85[ASN][1000 genomes]
rs35260897	0.89[ASN][1000 genomes]
rs35707377	0.82[ASN][1000 genomes]
rs35789691	0.80[ASN][1000 genomes]
rs4290892	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591607	0.91[ASN][1000 genomes]
rs4637403	0.89[ASN][1000 genomes]
rs4689139	0.85[ASN][1000 genomes]
rs4689779	0.87[ASN][1000 genomes]
rs56345748	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6815897	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6835393	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839110	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73084716	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214654	0.85[ASN][1000 genomes]
rs7677330	0.98[ASN][1000 genomes]
rs7689754	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7698678	0.91[ASN][1000 genomes]
rs870012	0.98[ASN][1000 genomes]
rs870013	0.98[ASN][1000 genomes]
rs871938	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871942	0.91[ASN][1000 genomes]
rs874235	0.98[ASN][1000 genomes]
rs882267	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv3356137	chr4:7565152-7569850	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3353976	chr4:7565952-7569150	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3388667	chr4:7565952-7569350	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3447531	chr4:7565952-7569550	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3348402	chr4:7567478-7568008	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3488687	chr4:7567514-7567967	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3488688	chr4:7567514-7567967	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7566400-7573400	Weak transcription	Spleen	Spleen
2	chr4:7566600-7572000	Weak transcription	Brain Substantia Nigra	brain
3	chr4:7567000-7571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:7567200-7568200	ZNF genes & repeats	Fetal Kidney	kidney
5	chr4:7567400-7568000	Bivalent/Poised TSS	Fetal Lung	lung
6	chr4:7567600-7568200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:7567600-7568200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr4:7567800-7572200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links