Variant report

Variant	rs870012
Chromosome Location	chr4:7565617-7565618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7565122..7567092-chr4:7570466..7572074,2	MCF-7	breast:
2	chr4:7564031..7566362-chr4:7585647..7587570,2	MCF-7	breast:
3	chr4:7565125..7567674-chr4:7573256..7575494,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10014162	0.82[ASN][1000 genomes]
rs10937836	0.83[ASN][1000 genomes]
rs11723455	0.80[ASN][1000 genomes]
rs11736943	0.84[ASN][1000 genomes]
rs13119421	0.98[ASN][1000 genomes]
rs16840505	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28468677	0.85[ASN][1000 genomes]
rs28519697	0.84[ASN][1000 genomes]
rs28703787	0.98[ASN][1000 genomes]
rs34289744	0.89[ASN][1000 genomes]
rs34445288	0.91[ASN][1000 genomes]
rs34861707	1.00[ASN][1000 genomes]
rs34996971	0.87[ASN][1000 genomes]
rs35260897	0.91[ASN][1000 genomes]
rs35707377	0.83[ASN][1000 genomes]
rs35789691	0.82[ASN][1000 genomes]
rs4290892	0.98[ASN][1000 genomes]
rs4365723	0.80[ASN][1000 genomes]
rs4591607	0.89[ASN][1000 genomes]
rs4637403	0.91[ASN][1000 genomes]
rs4689139	0.84[ASN][1000 genomes]
rs4689779	0.89[ASN][1000 genomes]
rs56345748	0.96[ASN][1000 genomes]
rs6815897	0.89[ASN][1000 genomes]
rs6835393	0.96[ASN][1000 genomes]
rs6839110	0.98[ASN][1000 genomes]
rs71601859	0.80[ASN][1000 genomes]
rs71601860	0.80[ASN][1000 genomes]
rs73084716	0.84[ASN][1000 genomes]
rs73214654	0.84[ASN][1000 genomes]
rs7677330	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689754	0.96[ASN][1000 genomes]
rs7698678	0.92[ASN][1000 genomes]
rs870013	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871938	0.98[ASN][1000 genomes]
rs871942	0.89[ASN][1000 genomes]
rs874235	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882267	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv3356137	chr4:7565152-7569850	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7563400-7567200	Weak transcription	Fetal Kidney	kidney
2	chr4:7565200-7566000	Enhancers	HepG2	liver
3	chr4:7565200-7566600	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:7565200-7566800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:7565400-7566600	Enhancers	Brain Substantia Nigra	brain
6	chr4:7565600-7566800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links