Variant report

Variant	rs10014162
Chromosome Location	chr4:7559563-7559564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10470723	0.86[ASN][1000 genomes]
rs10805001	0.88[ASN][1000 genomes]
rs10937836	0.83[ASN][1000 genomes]
rs1107692	0.88[ASN][1000 genomes]
rs11721353	0.85[ASN][1000 genomes]
rs11723455	0.80[ASN][1000 genomes]
rs11736943	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13119421	0.83[ASN][1000 genomes]
rs16840505	0.83[ASN][1000 genomes]
rs28468677	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28519697	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28703787	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34289744	0.89[ASN][1000 genomes]
rs34445288	0.91[ASN][1000 genomes]
rs34861707	0.82[ASN][1000 genomes]
rs34996971	0.87[ASN][1000 genomes]
rs35260897	0.87[ASN][1000 genomes]
rs35707377	0.83[ASN][1000 genomes]
rs35789691	0.82[ASN][1000 genomes]
rs4290892	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4365723	0.80[ASN][1000 genomes]
rs4591607	0.92[ASN][1000 genomes]
rs4637403	0.91[ASN][1000 genomes]
rs4689138	0.86[ASN][1000 genomes]
rs4689139	0.94[ASN][1000 genomes]
rs4689779	0.89[ASN][1000 genomes]
rs56345748	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6815897	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6835393	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6839110	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71601859	0.80[ASN][1000 genomes]
rs71601860	0.80[ASN][1000 genomes]
rs73084716	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73214654	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7677330	0.82[ASN][1000 genomes]
rs7689754	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7698678	0.89[ASN][1000 genomes]
rs870012	0.82[ASN][1000 genomes]
rs870013	0.82[ASN][1000 genomes]
rs871938	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs871942	0.92[ASN][1000 genomes]
rs874235	0.82[ASN][1000 genomes]
rs882266	0.89[ASN][1000 genomes]
rs882267	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv963584	chr4:7558948-7562043	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7558200-7565400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:7558600-7560000	Enhancers	HMEC	breast
3	chr4:7558800-7559800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:7558800-7559800	Enhancers	HSMM	muscle
5	chr4:7558800-7560000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:7558800-7560000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:7558800-7560000	Enhancers	NHEK	skin
8	chr4:7558800-7560000	Enhancers	Osteobl	bone
9	chr4:7558800-7560200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:7558800-7560200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:7559000-7559800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:7559000-7559800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:7559000-7559800	Enhancers	NH-A	brain
14	chr4:7559000-7559800	Enhancers	NHDF-Ad	bronchial
15	chr4:7559000-7560000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:7559000-7560000	Enhancers	HSMMtube	muscle
17	chr4:7559000-7560400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr4:7559400-7559800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:7559400-7559800	Enhancers	HepG2	liver
20	chr4:7559400-7560400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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